Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16150 1038 / 0 CAMTA calmodulin binding;transcription regulators (.1) AT3G16940 963 / 0 CAMTA calmodulin binding;transcription regulators (.1) AT5G09410 379 / 4e-116 CAMTA CAMTA1, EICBP.B calmodulin-binding transcription activator 1, ethylene induced calmodulin binding protein (.1.2.3) AT2G22300 286 / 3e-82 CAMTA SR1, CAMTA3 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) AT1G67310 263 / 6e-74 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) AT5G64220 249 / 4e-69 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) AT2G03430 43 / 0.0005 Ankyrin repeat family protein (.1) AT5G20490 44 / 0.0008 XI-17, ATXIK, XIK MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) AT2G14255 44 / 0.0008 Ankyrin repeat family protein with DHHC zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G107900 [exp] 1531 / 0 AT4G16150 1026 / 0.0 calmodulin binding;transcription regulators (.1) Potri.010G153100 [exp] 299 / 8e-87 AT5G64220 676 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Potri.005G075100 [exp] 301 / 9e-87 AT2G22300 976 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.001G057800 [exp] 292 / 3e-84 AT1G67310 832 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.003G170600 [exp] 270 / 2e-76 AT1G67310 856 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.007G093400 [exp] 269 / 8e-76 AT2G22300 991 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.008G099733 [exp] 83 / 3e-19 AT5G64220 97 / 1e-25 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Potri.004G210000 [exp] 46 / 9e-05 AT2G17390 418 / 1e-146 ankyrin repeat-containing 2B (.1) Potri.004G210100 [exp] 46 / 9e-05 AT2G17390 430 / 3e-151 ankyrin repeat-containing 2B (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037738 [exp] 1135 / 0 AT4G16150 1033 / 0.0 calmodulin binding;transcription regulators (.1) Lus10016873 [exp] 1061 / 0 AT3G16940 929 / 0.0 calmodulin binding;transcription regulators (.1) Lus10036455 [exp] 1024 / 0 AT4G16150 845 / 0.0 calmodulin binding;transcription regulators (.1) Lus10041126 [exp] 562 / 0 AT4G16150 430 / 1e-137 calmodulin binding;transcription regulators (.1) Lus10041704 [exp] 437 / 3e-138 AT2G22300 912 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Lus10024044 [exp] 291 / 2e-84 AT2G22300 822 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Lus10003405 [exp] 292 / 1e-83 AT5G64220 1028 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10036162 [exp] 290 / 1e-81 AT5G64220 818 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10003119 [exp] 276 / 3e-79 AT1G67310 640 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Lus10011352 [exp] 278 / 5e-79 AT1G67310 637 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF00023 [poplar] [flax] Ank Ankyrin repeat CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0159 [poplar] [flax] E-set PF01833 [poplar] [flax] TIG IPT/TIG domain
Representative CDS sequence Show only first row Show all	>Potri.010G141700.5 pacid=42797124 polypeptide=Potri.010G141700.5.p locus=Potri.010G141700 ID=Potri.010G141700.5.v4.1 annot-version=v4.1 ATGGAAAGTGGATTTCCTGATCGACTTATTGGGTCTGAGATTCATGGATTTAATTTTCTTCGAGATTTGGATGTTCCGAACATAATGGAGGAATCCCGAA CAAGATGGCTCCGTCCAAATGAAATTCATGCAATGCTCTGTAATTACAAGTTATTCACCATTAATGTCAAGCCGGTAAACTTTCCCAAGAGCGGCACAAT TGTATTGTTTGATCGTAAGATGCTTAGGAACTTCCGAAAAGATGGTCATAACTGGAAGAAGAAAAAAGATGGGAAGACTGTTAAAGAAGCTCACGAACAC TTAAAAGTTGGTAATGAAGAGAGGATTCATGTATACTACGCACATGGCCAAGATAACCAGACCTTTGTTCGCAGGTGTTATTGGCTGCTAGATAAGAGTT TGGAACACATAGTTCTTGTTCACTATCGAGAGACTCAGGAGGGTTCTCCAGCCACACCTGTGAATTCGCATTCTAGTTCAGTGTCTGACCAGTCTGCACC TCGGCTTTTATCAGAAGAATTTGATTCTGGAGCTGCTCGTGCATATGATTCAAGTGAGAAAGATCTAGAGTTAACAGGGTCCAGCGACAGCTTAACTGTC AGAAGTCATGCAATGAGGCTTCATGAGCTTAATACACTTGAATGGGATGAGCTGGTGACAAATGATCCTGGCAATTTAATCCCACCTGGAGGAGATAAAA TTCCATGCTTTGACCGACAGAATCAAATTGCAGTTAATGGGTCTGTAAATGATGGGGGCATTCTTTCAGGTTACCATTTATCAGCAGAAATGTCTACATT GGGCAATTTAACCAAGTCTATTGTTAGGAGCGGTAATACCCAGTTCAATAGTCCAGACAGTGTTTACAGCCAGTTAACAAGTGCTCAAGTAAATTCAGAT GCTCAGAGAAAGGGTTCTATTGTTCCAGGAACTAGTGATTCATTGAACAATTTGTTTAATGATGGTTTGCAAAGTCAGGATAGTTTTGGAAGGTGGATGA GCTCCATCATAGACCACTCTCCCTGTTCAGTAGATGATGCTGTGCTTGAATCTTCAATTTCATCTGGGCATGATTCGTTTGCTTCTCCAGGAATCGATCA ACATCAATCTTCTGTTCAAGAGCAAACATTTATCATAACTGATTTCTCACCTGCCTGGGCTTTTTCCAATGAAACAACCAAGATTCTTGTCACTGGATAT TTCCACGAGCAGTATCAGCATCTGGCAAAGTCCAATCTGTTTTGTATCTGTGGAGATACATTTGCTCGTGCAGAAATTGTCCAGGTTGGGGTCTATAGCT TTATGTTGCCGCCACATTCCCCTGGACTAGTAAATCTATGTTTGAGCTTGGATGGCCTTGAACCCACCAGCCAAATTTTGAATTTTGAGTACCGTGCTCC TTCAGTACATGATCCTGTTGTTTCATCAGAAGACAAATCCAAGTGGGAAGAATTCCATCTTCAGATGAGACTTGCTTATTTACTGTTTTCTACGTCCAAG ACCCTTGATGTTATATCTAATAAACTGTCACCGACTAACCTGAAGGAGGCTAAGAAGTTCGCACTCAAAACTTCTAATATTTCTAATAGTTGGGCATACT TAATTAAGGCAATTGAGGATGGCGGGATTTCAGTTGCACAAGCAAAAGATGGTTTTTTTGAACTTTCTTTAAAGAACACAATAAGGGAATGGTTATTGGA AAGAGTACTTGAAGGCTGTAAAACCACTGGATATGATGCTCAAGGCCTTGGAGTAATCCACTTGTGTGCTATTATTGGATATACTTGGGCTGTTTATTTA TTTTCGTGGTCAGGATTATCATTGGATTTTCGTGATAAACATGGATGGACAGCGCTTCACTGGGCAGCATATTATGGAAGGGAGAAAATGGTTGGAGCTC TCTTATCTGCAGGGGCAAAGCCAAACTTGGTTACAGATCCCACCAAAGAAAATCCTGGTGGGTGCACTGCTGCTGATCTTGCATCTGCGAAGGGTTATGA TGGTTTAGCTGCTTATCTGTCTGAAAAGGCTTTAGTGGCACAATTTGAATCTATGATAATAGCTGGAAATGTCACTGGCTCACTGCCAACAACTGCAACA AACACTGTAAATTCTGAAAACCTAAGCGAGGAGGAGTTGTACCTAAAGGATACCTTGGCAGCTTACCGCACAGCTGCTGATGCAGCAGCGCGTATACAGG TTGCTTTCAGAGAACACTCGCTAATGGTACGCACTAAAGCAGTCCAGTCATCCAGTCCAGAGGATGAAGCTCGGAATATTATCGCAGCAATGAAGATCCA ACATGCCTTTCGCAACTATGACAGTAAGAAAAAGATGGCAGCTGCTGCCCGCATTCAACATAGGTTCCGTACTTGGAAAATACGGAGGGATTTTCTTAAT ATGCGTCATAAGACTATCAAAATTCAAGCTGTTTTCCGAGGCTTCCAGGTGAGGAGGCAGTATCGCAAGATCATCTGGTCTGTTGGAGTGGTTGAGAAAG CAATTTTGAGATGGCGTTTAAAGAGAAGGGGCTTTCGTGGACTTCGTGTTGAACCTGTCGAAGCAGTTGTAGATCAGAGACATGACAGTGATACAGAGGA AGACTTTTACAAAATCAGCCAGAAACAGGCAGAAGAGCGGGTTGAGAGATCTGTAATACGGGTTCAAGCTATGTTCCGTTCAAAGAAAGCACAAGAGGAA TACTGGAGGATGAAATTAACCCATAACCAGGCAAAGGTGGAGTATGAAGGGCTTCTTGACCCGGATATGAATGTGGACAAATGA
AA sequence Show only first row Show all	>Potri.010G141700.5 pacid=42797124 polypeptide=Potri.010G141700.5.p locus=Potri.010G141700 ID=Potri.010G141700.5.v4.1 annot-version=v4.1 MESGFPDRLIGSEIHGFNFLRDLDVPNIMEESRTRWLRPNEIHAMLCNYKLFTINVKPVNFPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEH LKVGNEERIHVYYAHGQDNQTFVRRCYWLLDKSLEHIVLVHYRETQEGSPATPVNSHSSSVSDQSAPRLLSEEFDSGAARAYDSSEKDLELTGSSDSLTV RSHAMRLHELNTLEWDELVTNDPGNLIPPGGDKIPCFDRQNQIAVNGSVNDGGILSGYHLSAEMSTLGNLTKSIVRSGNTQFNSPDSVYSQLTSAQVNSD AQRKGSIVPGTSDSLNNLFNDGLQSQDSFGRWMSSIIDHSPCSVDDAVLESSISSGHDSFASPGIDQHQSSVQEQTFIITDFSPAWAFSNETTKILVTGY FHEQYQHLAKSNLFCICGDTFARAEIVQVGVYSFMLPPHSPGLVNLCLSLDGLEPTSQILNFEYRAPSVHDPVVSSEDKSKWEEFHLQMRLAYLLFSTSK TLDVISNKLSPTNLKEAKKFALKTSNISNSWAYLIKAIEDGGISVAQAKDGFFELSLKNTIREWLLERVLEGCKTTGYDAQGLGVIHLCAIIGYTWAVYL FSWSGLSLDFRDKHGWTALHWAAYYGREKMVGALLSAGAKPNLVTDPTKENPGGCTAADLASAKGYDGLAAYLSEKALVAQFESMIIAGNVTGSLPTTAT NTVNSENLSEEELYLKDTLAAYRTAADAAARIQVAFREHSLMVRTKAVQSSSPEDEARNIIAAMKIQHAFRNYDSKKKMAAAARIQHRFRTWKIRRDFLN MRHKTIKIQAVFRGFQVRRQYRKIIWSVGVVEKAILRWRLKRRGFRGLRVEPVEAVVDQRHDSDTEEDFYKISQKQAEERVERSVIRVQAMFRSKKAQEE YWRMKLTHNQAKVEYEGLLDPDMNVDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16150	CAMTA		calmodulin binding;transcripti...		Potri.010G141700 [exp]	0	1
AT5G25270			Ubiquitin-like superfamily pro...		Potri.006G059700 [exp]	1.73	0.7816
AT1G05960			ARM repeat superfamily protein...		Potri.007G128000 [exp]	2.00	0.7555
AT2G33620	AT-hook		AT hook motif DNA-binding fami...		Potri.002G005000 [exp]	5.56	0.6976
					Potri.015G071100 [exp]	6.48	0.7739
AT2G02820	MYB	ATMYB88	myb domain protein 88 (.1.2)		Potri.008G148400 [exp]	6.70	0.7505	MYB124.1
AT3G06540		AthREP	Rab escort protein (.1)		Potri.005G030000 [exp]	7.93	0.7592
AT4G37300		MEE59	maternal effect embryo arrest ...		Potri.007G049800 [exp]	8.36	0.6951
AT4G30900			DNAse I-like superfamily prote...		Potri.018G106700 [exp]	11.83	0.7399
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.005G111700 [exp]	15.87	0.7458	ATHK1.3
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Potri.014G120100 [exp]	16.24	0.7262	SDG913,EMB173.1

Compare expression of checked genes

Potri.010G141700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.