Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06670 1138 / 0 binding (.1.2) AT5G49390 251 / 3e-74 unknown protein AT5G49380 213 / 1e-63 unknown protein AT5G49370 154 / 6e-44 Pleckstrin homology (PH) domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G107300 [exp] 1586 / 0 AT3G06670 1169 / 0.0 binding (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037742 [exp] 1276 / 0 AT3G06670 1112 / 0.0 binding (.1.2) Lus10021547 [exp] 46 / 4e-05 AT3G06670 49 / 1e-06 binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04802 [poplar] [flax] SMK-1 Component of IIS longevity pathway SMK-1
Representative CDS sequence Show only first row Show all	>Potri.010G142200.8 pacid=42800286 polypeptide=Potri.010G142200.8.p locus=Potri.010G142200 ID=Potri.010G142200.8.v4.1 annot-version=v4.1 ATGGGCGCGCAAGAGAAATCGCAAGCGAACTCCAATCCGTTGCAGCGGGTGAAGGTCTACCGTCTGAATGATGATGGGAAATGGGATGACCAAGGGACCG GGCATGTTACCGTTGACTACTTGGAGAGATCAGAAGAGCTAGGCTTGTATGTTATTGATGAAGAGGACAATGAGACGTTGCTTTTGCACCGTATAACCCC GGATGACATTTACAGAAAACAAGAAGATACAATAATTTCATGGAGAGATCCAGAATTTTCTACAGAATTAGCACTAAGCTTCCAAGAGACTTCAGGGTGT TCTTACATATGGGATCATATCTGTAATGTGCAAAGAAGTCTACACTTTAGTACACTAAACAGTGAGGCATTTCAGAGCATGAACAGTGAGTTGAGAGAGT TGCCTGCTGTTGAACATTCTACACTTCCTCTAATACTTAAGACCATGTCTGAGAGTGGTATCGCAGATCAGATGAGACTGACAGAGCTAATATTGAACGA TCAAGATTTTTTCCGGAAGCTGATGGATGTTTTCAGAATCTGTGAAGACCTAGAAAACATTGATGGTCTTCACATGATATTCAAAATAGTCAGAGGGATC ATTATGCTCAACAGTCCTCAAATCTTTGAGAAGATATTTGGGGATGAATTGATCATGGATGTTATCGGTTCACTCGAGTATGATCCTGAGATTTCTCATA TCCAACATCATCGAATTTTTTTGAAAGAGCACGTCGTTTTCAAGGAGGCCATACCAATCAGAGATCCTCATGTCCTGTCAAAGATACATCAGACGTACAG AGTTGGTTATCTGAAGGATGTTGTTCTGGCCAGAGTATTGGATGAGGGCACAGTTGCAAATCTGAATTCCATAATTCATGGAAATAATGCTGTTGTTGTT TCTTTGTTAAAGGATGACAATACCTTTATTCAGGAATTGTTTGCAAGGTTGAGATCGCCTGCCACGTCTGCAGAATCAAAGAAAAATCTGGTATATTTCT TGCACGAGTTTTGTAGTTTAAGCAAGAGCCTGCAGATGGTCCAGCAGCTCCGGCTATTTAGGGAACTCATGAATGAAGGTATCTTTGACATCATTGCTGA TACTTTGCAGAATCAAGATAAGAAAATTGTCTTAACTGGGACAGATATCCTCATTCTTTTCTTGAATCAGGATCCAAACCTTCTGCGTTCTTATGTTGTT CGGCAGGAAGGAATTCAGCTACTAGGGTTGTTGGTTAAAGGAATGATAACAGACTTTGGAGATGACATGCATTGCCAGTTTCTTGAAATTCTTCGCAGTT TATTGGATTCCTATACTCTGTCAGGAGCACAGAGAGATAATATAATTGAAATCTTCTATGAGAAGCACTTGGGCCAATTAATTGATGTTATAACAGCATC TTGTCCTAATGAAGTTGTTCCTCCATCGAGTGGTAAATCTTCAGGGTTTAGTGAGAGAGTTGACACTCGGAATGGAACGAAGCCAGAAATACTCTCAAAC ATATGTGAATTGCTATGCTTCTGCGTTCTGCACCATCCATATAGAATAAAGTGCAACTTTCTCCTTGATAATGTAATCGAAAAAGTCTTGACATTGACAC GAAGGAAGGAAAAATACCTTGTAGTTGCTGCTGTTCGTTTTGTTCGCACTATCCTTTCCCGCCATGATGAGCATTTGATAAATCATTTTGTCAAGAACAA CCTCCTTAAACCAATTGTAGATGCCTTTGTGAGCAACGGAGACCGTTATAATCTGCTGAACTCTGCCATTTTAGAGCTTTTTGAGTATATCCGCAAGGAA AACCTGAAGTCGTTGCTCAAGTATATAGTTGATTCATTCTGGAATGAGTTGGTCAAATTCGAGCATTTGACCTCCATTCAGTCTCTAAAAGTTAAATATG AGCAGTGTCTAGAGCAGTGTGGAGCAAAAAGTACTGGTAACATATTGGACCCGAGAAAACGAAATGATGAACGTGCTCTAGAAAAAGAAGAGGAAGACTA TTTCAACGAGGACAGCAGCGATGAAGAAGACACAGCTTCTGCATCCCATACCCAAAAACCACAAGCTCAACCAGTTTCATCCAATGGAGTTGCTGCAGGG TACCCATCATTAAGTCCACGTTCCAGTGGGCTTGTTGATTATGATGATGATGAGGATGATGAAGACTATAGACCGCCTCCTAAGAAACAGCTAGAAACGC CAGAGGAAGATGAAGGAACTATTGAATCCCTTGGGATGAAGCGGAAATTGCCTTCCAAGGATAAGGAACCTGAACTAGTAAAGAAACAGCAATTAGGTAA ACACTCGAAGTCAAGAGAGAGTGTATTTGCTGCTTTATGTTCTACACTTAGCCATGCTGTCTTGCCCAGCACAAAAACTGCAACTGCCGTGCATGCAACT CCTGTGGATGGAAACAAAGGCTCAACTGAAGAAAGTCACCAAGAGAATGATCCTGTCATTTTGAGAACCTGTTCTGATAACGAAAGTACTTCAGGTGAGG AAAATCACAAAGAGAAGGATCCTGCTGGTCCTAAAAGCTGTTCTGATTGCTTACACAGCACATCAGAAAATGGACAGATGATTGGAGATGATGGTCCATT AATACCACCACCTAAATCCTCATCAGAAATGACCGTAAACGGGTCTTAA
AA sequence Show only first row Show all	>Potri.010G142200.8 pacid=42800286 polypeptide=Potri.010G142200.8.p locus=Potri.010G142200 ID=Potri.010G142200.8.v4.1 annot-version=v4.1 MGAQEKSQANSNPLQRVKVYRLNDDGKWDDQGTGHVTVDYLERSEELGLYVIDEEDNETLLLHRITPDDIYRKQEDTIISWRDPEFSTELALSFQETSGC SYIWDHICNVQRSLHFSTLNSEAFQSMNSELRELPAVEHSTLPLILKTMSESGIADQMRLTELILNDQDFFRKLMDVFRICEDLENIDGLHMIFKIVRGI IMLNSPQIFEKIFGDELIMDVIGSLEYDPEISHIQHHRIFLKEHVVFKEAIPIRDPHVLSKIHQTYRVGYLKDVVLARVLDEGTVANLNSIIHGNNAVVV SLLKDDNTFIQELFARLRSPATSAESKKNLVYFLHEFCSLSKSLQMVQQLRLFRELMNEGIFDIIADTLQNQDKKIVLTGTDILILFLNQDPNLLRSYVV RQEGIQLLGLLVKGMITDFGDDMHCQFLEILRSLLDSYTLSGAQRDNIIEIFYEKHLGQLIDVITASCPNEVVPPSSGKSSGFSERVDTRNGTKPEILSN ICELLCFCVLHHPYRIKCNFLLDNVIEKVLTLTRRKEKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVSNGDRYNLLNSAILELFEYIRKE NLKSLLKYIVDSFWNELVKFEHLTSIQSLKVKYEQCLEQCGAKSTGNILDPRKRNDERALEKEEEDYFNEDSSDEEDTASASHTQKPQAQPVSSNGVAAG YPSLSPRSSGLVDYDDDEDDEDYRPPPKKQLETPEEDEGTIESLGMKRKLPSKDKEPELVKKQQLGKHSKSRESVFAALCSTLSHAVLPSTKTATAVHAT PVDGNKGSTEESHQENDPVILRTCSDNESTSGEENHKEKDPAGPKSCSDCLHSTSENGQMIGDDGPLIPPPKSSSEMTVNGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06670			binding (.1.2)		Potri.010G142200 [exp]	0	1
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Potri.003G086400 [exp]	1.73	0.9115
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.010G219600 [exp]	3.00	0.8965
AT1G77800			PHD finger family protein (.1....		Potri.002G089400 [exp]	3.16	0.9092
AT1G79020			Enhancer of polycomb-like tran...		Potri.014G000600 [exp]	5.29	0.8683
AT3G14270		FAB1B	FORMS APLOID AND BINUCLEATE CE...		Potri.003G072300 [exp]	6.70	0.8412
AT3G13225			WW domain-containing protein (...		Potri.001G371600 [exp]	7.07	0.8384
AT1G50410			SNF2 domain-containing protein...		Potri.007G000700 [exp]	7.41	0.8764
AT1G24300			GYF domain-containing protein ...		Potri.001G326500 [exp]	7.74	0.8866
AT4G08350		GTA2, GTA02	global transcription factor gr...		Potri.009G124200 [exp]	8.36	0.8883
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Potri.007G092200 [exp]	8.66	0.8683

Compare expression of checked genes

Potri.010G142200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.