Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16160 238 / 4e-81 ATOEP16-2, ATOEP16-S Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1.2) AT2G28900 74 / 8e-17 OEP16, ATOEP16-L, ATOEP16-1 outer envelope protein 16, OUTER PLASTID ENVELOPE PROTEIN 16-L, outer plastid envelope protein 16-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G107200 [exp] 324 / 3e-115 AT4G16160 214 / 9e-72 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1.2) Potri.001G239900 [exp] 69 / 5e-15 AT2G28900 178 / 2e-58 outer envelope protein 16, OUTER PLASTID ENVELOPE PROTEIN 16-L, outer plastid envelope protein 16-1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016878 [exp] 245 / 1e-83 AT4G16160 209 / 1e-69 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1.2) Lus10037743 [exp] 215 / 1e-71 AT4G16160 186 / 3e-60 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1.2) Lus10016545 [exp] 78 / 1e-18 AT2G28900 185 / 4e-61 outer envelope protein 16, OUTER PLASTID ENVELOPE PROTEIN 16-L, outer plastid envelope protein 16-1 (.1) Lus10040810 [exp] 59 / 2e-11 AT2G28900 181 / 9e-60 outer envelope protein 16, OUTER PLASTID ENVELOPE PROTEIN 16-L, outer plastid envelope protein 16-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02466 [poplar] [flax] Tim17 Tim17/Tim22/Tim23/Pmp24 family
Representative CDS sequence Show only first row Show all	>Potri.010G142300.3 pacid=42797084 polypeptide=Potri.010G142300.3.p locus=Potri.010G142300 ID=Potri.010G142300.3.v4.1 annot-version=v4.1 ATGAGCCACAACTTGGAAACGAGGTCATTTGTTGATGAAATCCGTCACTTTGATAAAAGTAGCTTCTTCGACTTTGGTCACCCTCTCCTTAACCGTATTG CCGAGAGTTTTGTCAAGGCCGCTGGGATTGGAGCAATTCAAGCGGTGTCTCGGGAGGCTTATTTCACAGCCATTGAAGGTGCTGGATTGGAGTCGAGTGG TGGTTTGCCAGCGGAGATTTCTGTTGATGGCAAGAAGCCCCATCGTTTCCCTGACCTCAGAGGTGAAACCAACAGAAAATCCCTTGAAGCCTTGGTGATG AACACTGGAAAGGAATCCTTACAATGGGGACTCGCAGCAGGAGTGTATTCCGGCCTCACTTATGGACTGAGGGAGTCTCGTGGAGTTCATGATTGGAAAA ACAGTGCAGTGGCTGGAGCAATAACAGGTGTGGCACTGGCACTGACAGCAGACGACAAATCCCATGAGCAGATTGTGCAATGTGCTATCACTGGAGCTGC GATCTCCACTGCTGCAAATCTTCTTACAGGGATATTCTAA
AA sequence Show only first row Show all	>Potri.010G142300.3 pacid=42797084 polypeptide=Potri.010G142300.3.p locus=Potri.010G142300 ID=Potri.010G142300.3.v4.1 annot-version=v4.1 MSHNLETRSFVDEIRHFDKSSFFDFGHPLLNRIAESFVKAAGIGAIQAVSREAYFTAIEGAGLESSGGLPAEISVDGKKPHRFPDLRGETNRKSLEALVM NTGKESLQWGLAAGVYSGLTYGLRESRGVHDWKNSAVAGAITGVALALTADDKSHEQIVQCAITGAAISTAANLLTGIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16160		ATOEP16-2, ATOE...	Mitochondrial import inner mem...		Potri.010G142300 [exp]	0	1
AT1G47670			Transmembrane amino acid trans...		Potri.004G181000 [exp]	6.63	0.8062
AT1G07380			Neutral/alkaline non-lysosomal...		Potri.001G247400 [exp]	7.00	0.6190
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Potri.014G106700 [exp]	9.59	0.7853
AT4G37280			MRG family protein (.1)		Potri.002G122500 [exp]	16.61	0.7853
					Potri.006G076350 [exp]	17.94	0.7853
					Potri.010G120401 [exp]	20.12	0.7665
AT3G44540		FAR4	fatty acid reductase 4 (.1.2)		Potri.009G145100 [exp]	23.49	0.7392
AT1G58170			Disease resistance-responsive ...		Potri.016G061000 [exp]	26.53	0.6811
AT3G15650			alpha/beta-Hydrolases superfam...		Potri.001G173700 [exp]	30.62	0.5817
AT5G41761			unknown protein		Potri.014G095000 [exp]	39.42	0.7216

Compare expression of checked genes

Potri.010G142300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.