Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16265 146 / 3e-47 NRPE9B, NRPD9B, NRPB9B RNA polymerases M/15 Kd subunit (.1) AT3G16980 146 / 4e-47 NRPE9A, NRPD9A, NRPB9A RNA polymerases M/15 Kd subunit (.1) AT3G25940 38 / 0.0002 TFIIB zinc-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G106900 [exp] 151 / 3e-49 AT3G16980 216 / 1e-74 RNA polymerases M/15 Kd subunit (.1) Potri.012G015900 [exp] 38 / 0.0001 AT4G07950 124 / 5e-38 DNA-directed RNA polymerase, subunit M, archaeal (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016880 [exp] 100 / 8e-29 AT3G16980 157 / 6e-51 RNA polymerases M/15 Kd subunit (.1) Lus10037747 [exp] 75 / 2e-18 AT3G16980 89 / 1e-23 RNA polymerases M/15 Kd subunit (.1) Lus10005984 [exp] 43 / 2e-06 AT1G01210 112 / 2e-33 DNA-directed RNA polymerase, subunit M, archaeal (.1) Lus10030228 [exp] 43 / 3e-06 AT4G07950 120 / 6e-36 DNA-directed RNA polymerase, subunit M, archaeal (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF01096 [poplar] [flax] TFIIS_C Transcription factor S-II (TFIIS)
Representative CDS sequence Show only first row Show all	>Potri.010G142500.2 pacid=42799678 polypeptide=Potri.010G142500.2.p locus=Potri.010G142500 ID=Potri.010G142500.2.v4.1 annot-version=v4.1 ATGCAGAAGATTCTCCTCTATGCATGCCGCAGCTGTGATCACCAGGAGGTTGCTGGTAATAATCGTGTCTACAGAAATGAGATATATCACCATGCTGCAG AATACACACAAGTGTTGCAGGATGTGGCTTCAGACCCCGCTCTGCCTCGGACTAAATCTGTTTGTTGTGCTGTATGCGGCTATGGGGAAGCTGTATTCTT ACAGGCAACCGCGGGAGATGAGGGCATGACAATGTTTTATGTCTGCTGCAACCCAAACTGCGGGCATCGGTGGAGAGATTGA
AA sequence Show only first row Show all	>Potri.010G142500.2 pacid=42799678 polypeptide=Potri.010G142500.2.p locus=Potri.010G142500 ID=Potri.010G142500.2.v4.1 annot-version=v4.1 MQKILLYACRSCDHQEVAGNNRVYRNEIYHHAAEYTQVLQDVASDPALPRTKSVCCAVCGYGEAVFLQATAGDEGMTMFYVCCNPNCGHRWRD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16265		NRPE9B, NRPD9B,...	RNA polymerases M/15 Kd subuni...		Potri.010G142500 [exp]	0	1
AT4G27670		HSP21	heat shock protein 21 (.1)		Potri.015G005801 [exp]	6.48	0.9974
					Potri.014G065951 [exp]	7.00	0.9973
AT1G03910			unknown protein		Potri.001G242900 [exp]	7.48	0.9900
AT5G16460			Putative adipose-regulatory pr...		Potri.013G085850 [exp]	11.22	0.9817
AT5G03890			unknown protein		Potri.015G005700 [exp]	14.96	0.9477
AT1G74875			unknown protein		Potri.013G008800 [exp]	17.66	0.9967
AT1G77450	NAC	ANAC032	NAC domain containing protein ...		Potri.001G220500 [exp]	20.04	0.9793
					Potri.002G099150 [exp]	20.97	0.9964
					Potri.011G026450 [exp]	21.21	0.9944
AT4G09190			F-box and associated interacti...		Potri.005G254633 [exp]	22.04	0.9906

Compare expression of checked genes

Potri.010G142500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.