Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49430 1752 / 0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1) AT2G47410 1179 / 0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1.2) AT3G49660 85 / 3e-17 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G52820 83 / 6e-16 WD-40 repeat family protein / notchless protein, putative (.1) AT1G18080 80 / 2e-15 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) AT3G16650 80 / 7e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 77 / 5e-14 PRL1 pleiotropic regulatory locus 1 (.1) AT5G25150 77 / 8e-14 TAF5 TBP-associated factor 5 (.1) AT3G18130 75 / 1e-13 RACK1C_AT receptor for activated C kinase 1C (.1) AT2G41500 76 / 2e-13 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G106800 [exp] 2890 / 0 AT5G49430 1729 / 0.0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1) Potri.014G121100 [exp] 1231 / 0 AT2G47410 1507 / 0.0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1.2) Potri.005G148500 [exp] 86 / 2e-17 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 85 / 4e-17 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 82 / 2e-15 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.018G020200 [exp] 82 / 3e-15 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.006G250200 [exp] 76 / 6e-14 AT1G52360 466 / 3e-157 Coatomer, beta' subunit (.1.2) Potri.002G051900 [exp] 75 / 7e-14 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G047300 [exp] 77 / 8e-14 AT5G16750 794 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037748 [exp] 1804 / 0 AT5G49430 1224 / 0.0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1) Lus10016882 [exp] 1019 / 0 AT5G49430 995 / 0.0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1) Lus10016881 [exp] 852 / 0 AT5G49430 453 / 3e-138 WD40/YVTN repeat-like-containing domain;Bromodomain (.1) Lus10004167 [exp] 86 / 2e-16 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10003487 [exp] 83 / 2e-16 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 84 / 4e-16 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10039636 [exp] 81 / 1e-15 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039597 [exp] 80 / 9e-15 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10024447 [exp] 79 / 2e-14 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10006916 [exp] 75 / 7e-14 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [poplar] [flax] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Potri.010G142700.1 pacid=42799318 polypeptide=Potri.010G142700.1.p locus=Potri.010G142700 ID=Potri.010G142700.1.v4.1 annot-version=v4.1 ATGATGCCTTTGAGCTTTTCCAGTAAGGAGCGTGAGATTGCTCAACTTGCAGAGTCAGAGACAAGTCGCAGAAGGGTGAAAGATGTGGATGTTGACCTTA GTGAAGTTTACTTTTTAATTATGCATTTCCTTTCAGCTGGGCCATGTCAGAGAACTTATGTACAGTTTTGGAATGAACTTCTCGAACATCAACTTTTACC TAGAAGATATCATGCTTGGTATTCAAGAAGTGGAGCACATAGTGGGGATGAAAATGATAATGGTCTATCATTTCCATTAAGTTACAATAGTTTGGAGGAG CAGTATGCAATGTACCCTCACATTGAGAAGAATCACTTGGTAAAGCTTTTGAAGCAATTATTGCTCAACACAGCCTCTCCATCAGAAGGCTTGATTGGTG ATGCTCCAAATGCTGCTGATGTTCCTACCCTTCTGGGAACGGGTTCATTTTCACTTTTGAGTTGTGATAGAGATAAGGGAAATGACCAAGTCAAGCACCC CCCTGCTCACATGCGATGGCCTCATAGACATGCTGATCAGGTTCGCGGGTTAAGTTTGAGGGAAATTGGAGGTGGTTTTGCAAGACACCATCGTGCACCT TCTATTCGTGCAGCATGCTATGCTATTGCGAAACCATCAACTATGGTACAGAAAATGCAAAATGTCAAGAGAGTACGCGGACATCGGAATGCTGTCTATT GTGCAATATTTGATCGCTCTGGGAGATATGTTGTCACTGGTTCAGACGATCGTCTTGTAAAAATCTGGTCCATGGAAACTGCTTTTTGCTTAGCTAGCTG TCGGGGGCATGAAGGGGACATTACTGACTTGGCTGTAAATTCAAACAATACCTTGGTGGCATCCTCTTCAAATGATTGCATAATTCGAGTTTGGCGTTTG CCAGATGGGATGCCAATATCAGTTCTACGTGGACACTCTGCAGCTGTTACTGCCATTGCATTTAGTCCAAGGCCTGGTTCTGCATACCAGCTTTTGTCGT CTTCAGATGATGGAACATGTAGGATTTGGGATGCCAGGTCTTCCAACTTAGGTACACGGATATATGTTCCAAGGCCTCCAGATCCTGTGGCTGGAAAGAA CAGTGGTCCGTCCACAAGTAGTGGTCCTCAGAGCCATCAGATTTTTTGTTGTGCATTCAATGCTCATGGAACTGTATTTGTCACTGGTAGCTCTGACCAC CTTGCTAGGGTGTGGAATGCTCTTAAATCCAACACGGTTGATTCAGCCCAGCCAAATCATGAGATAGATGTGTTACCTGGCCACGAGAATGATGTCAACT ATGTCCAATTTAGTGGTTGTGCCATGCCATCTAGATTTTCTATGGCTGACAACTCAAAGGAAGAAAATATTCCAAAATTTAAAAATTCATGGTATTTTCA CGAAAGCATTGTTACCTGTTCTCGAGACGGCAGTGCAATTATTTGGATTCCAAAATCACGTAGATCACATGGTAAAGCTGGCCGTTGGATACGGCATTAT CATCTGAAAGTTCCTCCTCCACCAATGCCTACTCAACCTCCACGAGGAGGTCCACGACAGAGAATTCTTCCAACTCCTCGTGGGGTAAACATGATTGCGT GGAGTCTGGATAATCGTTTTGTCCTTGCTGCTATCATGGATTGCAGAATATGTGTTTGGAATGCTGCTGATGGTAGTTTGGTGCATTCTTTGACTGGTCA TACTCAATCTACATATGTTCTGGATGTTCATCCTTTCAACCCGCGAATAGCTATGAGTGCTGGCTATGATGGAAAAACAATAGTGTGGGATATTTGGGAG GGCACACCCATCCGGATCTACGAAATTTCACATTTCAAGTTGGTTGATGGAAAGTTTTCACCGGACGGGACATCTATTATACTTTCGGATGACGTGGGTC AGTTGTACATATTAAATACAGGCCAAGGCGAGTCCCAAAAGGATGCTAAATATGATCAGTTCTTCCTTGGTGATTATCGGCCCCTGATACAAGATACCTA CGGAAATGTACTTGACCAGGAAACTCAGCAAGTACCATTCCGGCGGAATATGCAGGATCTTCTTTGTGACTCAGGGATGATTCCTTATACGGAACCTTAC CAGAGCATGTACCAGCAGAGACGGTTAGGAGCTCTGGGTGTGGAGTGGAAGCCATCTTCTGTAAGATTTGCTGTTGGACCAGACTTCAGTCTAGACCCGG ATAACCAAATGCTCGCCTTGGCCGACTTGGATGTATTGGTTGAGCCACTGCCTGATTTCATAGATGCCATGGATTGGGAACCAGAAAATGACATGCAAAG TGATGAAAATGATTCAGAGTACAATGCCCCTGAAGAAAATTCTTCTGAGGCCGAGCAAGGAAGGTCAAATTATAGTTCCTCTGGTGATCCAGAGTGTAGT GCAGAAGACAGTGAGGCTGAGGGCAGGGATGGTTTCCGAGGATCTAAAAGGAGAAAACAAAAGGCTGAAATTCAGATAATGACTTCTTCTGGGAGGCGTG TTAAAAGGAAGAATTTGGATGAATGTGATGGAAACTCAATTAGAAGTAATCGAACTAGGAAATCAAGGATTGACAGGAAAGCTTCAAAGAGGAAGTCTTC CACTTCAAAGGCCTTGAGACCTCAAAGAGCTGCTGCCCGCAATGCGCTTAGTTTATTTTCAAAAATTACTGGAACAGCTACAGACGCAGAAGATGAAGAT GGCTCAGAAGGTGACTTATCAGAAACTGAATCTGGAATGCAAGACTCAAATATTGAAAGCGATGAATCAGATAGATCTTTGCACGATGAGGGAAACAGGA ATTTGAAAGGAAAAGATATCCTGGAAGAGCCTGAAGACTTCGCAAAATATCATGAATTTACTGAATCGCACATGAATACTATAAATAGGAGGAGATTGGT CCTTAAACTGCCAGTTCATGATTCTAGTAAGATTGTGCTCCCAGAGTGTGGAATGCACAAGGGTGACAGCCAGGTTGATTTGGTTGGATCATCATCCAAA GCTCCTCAGGAAGCCACTGAGGTAAATGGGGTTCCTACAAGCTCTCAAGATCCAGGATATTTTTCTGGTGATGCACATTGCAGCAGAATGGATGGAGGAA GAAGAGCACAGATAAAAAATTATCCTTTGGACCTGTCTGAAGAATATAAAAATGGGGATATCAGATGGGGAGGTGTAAAGGCTCGTACTTTTAAGCGTCA GAGATTGGGAGAATCCATTTCATCAGCAGCATATACTGGATCTAGTGCATGCCTTGGTGAACACAATGAAAATGAAAATAATCTCAACAGGTACTCAAAA CTTCAGGAGGATAATGGCACAATATCCCCTACTTTAGAAGTTCAAAATAACACGGACAAAGGAGTTGTACCAGTGAATGGAAGAAATGCTGGTGCTGATA CCTTTGAGCTTGTAAATGATGTGTCCAATGGTGAAGAGCACCCAACCTTCAACGGATGCCTGGACTCTGATAAATTACCAACCCTGGGTCACATGGTTAA TGGGAATGACAACCCTCCTGATCTCAGAGAGAGCCTCCCGCCTTTCTCAACAAAGATAAGGATAAGATCAAAAAAGATATTGAAGGACTCACTAGATAAT CAAGGAAATGGTAGGTGTGATTTATCTACTGATAAACCTGCAAACATGACACAGAATCCAGTCAAGGAGATGCTGGAGAATAATGGCTCCAATGGAATTG CTCCAGAATATAAAGGTGATGGATTGGAAGAATCAGATACTCAGATTGGTGAAATTTCCATGCCATCCTTGGACAACTCTTCGGGGTCCCGTTCAGATCC GAAAAGGATGTTTGATGTTGTTTACAGAAGGTCAAAGCCAGGCAGAGGTAGAATTAGCTCAGAAGGTGATGGTAGCATCAGAGAAGACACTTTAAGTGCT TGTGACCCTCATCTTGATTTCAGAGGGGATTCCTATGAAGGCGCATCTGGTGGATCTCATAGAACACGTTCCATGGGCTTGAAGGCACCTACACATGATT CAAATATGGCAAGCAATAATCTCCAGTTGGAGCAGGGACATGAATCAGATGATACTTGTAGAGATGCCCTCAACAATTCCATTAATAGATGTCAGCTTTC ATGTGAAGAATGGGGATCCAGCTCAAGGATGACAGCTCGCTTGAGATCTACTAGAAACAGGAAAGCCAGTTATCACTTTCGTGACACAAGTCCAGTAGAT GGAAGGAAGTTGCATCAGTCAGCCAAAAAAGCATCATGGTTAATGCTGTCAATGCACGAGGAGGGGTCTCGTTATATCCCCCAGCAAGGGGATGAAGTTG CATATTTGAGACAGGGCCATCAAGAGTACTTAGATCGCATGAAGTCTAAAGAAGCAGGCCCTTGGAAAATAATGAAGGGAAACATTAGGGCGGTCGAGTT CTGTAAGGTTGAAGCCCTTGAGTATGCTGCTCTTGCAGGATCTGGAGATTGTTGTTGCAAAATGACGCTTAGATTTGTAGATCCTACTTCCAGCACATTT CAGAAATCATTCAAGTTAACTCTACCCGAAATGACTGGCTTCCCAGATTTTCTTGTTGAGAGAACTCGGTTCGATGCTGCCATACAGAGGAATTGGAGTC GTAGGGATAAATGTAAGGTCTGGTGGAAAAACGAGGGTGAAGAAGATGGTGATTGGTGGCATGGCCGGGTTCTATATACGAAGCCCAAATCTTCGGAGTT TCCTGACAGTCCATGGGAGAGGTGTACTGTTCAGTACAAGAGCGATCCCAAAGAATTGCATGAACACAGTCCTTGGGAGCTTTTTGATGATGATACTCAG TTGGAGCAGCCTCGTATAGATGAGGAGATCACAAATAAGTTGTTGTCTGCCTTCGCCAAATTAGAGCGATCAGGCAAAAAAGACCAGGATCACTATGGGG TTGAAAAGCTAAGGCAAGTTTCACAGAAGTCAAATTTTATTAACAGGTTCCCAGTTCCATTGTCTCTTGAAGTGATCCAGTCAAGGTTAGAAAACAACTA CTATAGAAGCTTGGAGGCATTGAAGCATGACTTTGAAGTCGTCCTCTCAAACGCAGAATCACACTTTGAGAAGAATGCAGAGCTCTCCATAAAAATGAGA CGTTTATCAAACTGGTTCGCGCGGACATTATCATCTTTGTAG
AA sequence Show only first row Show all	>Potri.010G142700.1 pacid=42799318 polypeptide=Potri.010G142700.1.p locus=Potri.010G142700 ID=Potri.010G142700.1.v4.1 annot-version=v4.1 MMPLSFSSKEREIAQLAESETSRRRVKDVDVDLSEVYFLIMHFLSAGPCQRTYVQFWNELLEHQLLPRRYHAWYSRSGAHSGDENDNGLSFPLSYNSLEE QYAMYPHIEKNHLVKLLKQLLLNTASPSEGLIGDAPNAADVPTLLGTGSFSLLSCDRDKGNDQVKHPPAHMRWPHRHADQVRGLSLREIGGGFARHHRAP SIRAACYAIAKPSTMVQKMQNVKRVRGHRNAVYCAIFDRSGRYVVTGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVNSNNTLVASSSNDCIIRVWRL PDGMPISVLRGHSAAVTAIAFSPRPGSAYQLLSSSDDGTCRIWDARSSNLGTRIYVPRPPDPVAGKNSGPSTSSGPQSHQIFCCAFNAHGTVFVTGSSDH LARVWNALKSNTVDSAQPNHEIDVLPGHENDVNYVQFSGCAMPSRFSMADNSKEENIPKFKNSWYFHESIVTCSRDGSAIIWIPKSRRSHGKAGRWIRHY HLKVPPPPMPTQPPRGGPRQRILPTPRGVNMIAWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTQSTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE GTPIRIYEISHFKLVDGKFSPDGTSIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLIQDTYGNVLDQETQQVPFRRNMQDLLCDSGMIPYTEPY QSMYQQRRLGALGVEWKPSSVRFAVGPDFSLDPDNQMLALADLDVLVEPLPDFIDAMDWEPENDMQSDENDSEYNAPEENSSEAEQGRSNYSSSGDPECS AEDSEAEGRDGFRGSKRRKQKAEIQIMTSSGRRVKRKNLDECDGNSIRSNRTRKSRIDRKASKRKSSTSKALRPQRAAARNALSLFSKITGTATDAEDED GSEGDLSETESGMQDSNIESDESDRSLHDEGNRNLKGKDILEEPEDFAKYHEFTESHMNTINRRRLVLKLPVHDSSKIVLPECGMHKGDSQVDLVGSSSK APQEATEVNGVPTSSQDPGYFSGDAHCSRMDGGRRAQIKNYPLDLSEEYKNGDIRWGGVKARTFKRQRLGESISSAAYTGSSACLGEHNENENNLNRYSK LQEDNGTISPTLEVQNNTDKGVVPVNGRNAGADTFELVNDVSNGEEHPTFNGCLDSDKLPTLGHMVNGNDNPPDLRESLPPFSTKIRIRSKKILKDSLDN QGNGRCDLSTDKPANMTQNPVKEMLENNGSNGIAPEYKGDGLEESDTQIGEISMPSLDNSSGSRSDPKRMFDVVYRRSKPGRGRISSEGDGSIREDTLSA CDPHLDFRGDSYEGASGGSHRTRSMGLKAPTHDSNMASNNLQLEQGHESDDTCRDALNNSINRCQLSCEEWGSSSRMTARLRSTRNRKASYHFRDTSPVD GRKLHQSAKKASWLMLSMHEEGSRYIPQQGDEVAYLRQGHQEYLDRMKSKEAGPWKIMKGNIRAVEFCKVEALEYAALAGSGDCCCKMTLRFVDPTSSTF QKSFKLTLPEMTGFPDFLVERTRFDAAIQRNWSRRDKCKVWWKNEGEEDGDWWHGRVLYTKPKSSEFPDSPWERCTVQYKSDPKELHEHSPWELFDDDTQ LEQPRIDEEITNKLLSAFAKLERSGKKDQDHYGVEKLRQVSQKSNFINRFPVPLSLEVIQSRLENNYYRSLEALKHDFEVVLSNAESHFEKNAELSIKMR RLSNWFARTLSSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49430			WD40/YVTN repeat-like-containi...		Potri.010G142700 [exp]	0	1
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Potri.013G035600 [exp]	3.16	0.8327	XRN4.2
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Potri.001G003900 [exp]	3.74	0.8387
AT5G49430			WD40/YVTN repeat-like-containi...		Potri.008G106800 [exp]	4.00	0.8244
AT1G60200			splicing factor PWI domain-con...		Potri.010G094700 [exp]	4.24	0.8352
AT5G11850			Protein kinase superfamily pro...		Potri.018G053800 [exp]	5.19	0.7831
AT5G18830	SBP	ATSPL7, SPL7	squamosa promoter binding prot...		Potri.010G026200 [exp]	5.74	0.8168	SPL7.1
AT5G61140			U5 small nuclear ribonucleopro...		Potri.015G056501 [exp]	8.36	0.8033
AT3G49725			GTP-binding protein, HflX (.1)		Potri.007G007700 [exp]	8.48	0.8294
AT2G19390			unknown protein		Potri.018G056400 [exp]	8.66	0.8030
AT2G39580			unknown protein		Potri.010G208200 [exp]	8.94	0.8207

Compare expression of checked genes

Potri.010G142700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.