Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49450 85 / 1e-21 bZIP ATBZIP1 basic leucine-zipper 1 (.1) AT3G62420 79 / 2e-19 bZIP ATBZIP53 basic region/leucine zipper motif 53 (.1) AT1G75390 64 / 2e-13 bZIP ATBZIP44 basic leucine-zipper 44 (.1.2) AT2G18160 62 / 1e-12 bZIP GBF5, ATBZIP2 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) AT4G34590 58 / 3e-11 bZIP ATB2, ATBZIP11, BZIP11, GBF6 Arabidopsis thaliana basic leucine-zipper 11, G-box binding factor 6 (.1) AT3G30530 52 / 5e-09 bZIP ATBZIP42 basic leucine-zipper 42 (.1) AT1G13600 49 / 7e-08 bZIP ATBZIP58 basic leucine-zipper 58 (.1) AT5G15830 48 / 3e-07 bZIP ATBZIP3 basic leucine-zipper 3 (.1) AT5G38800 47 / 3e-07 bZIP ATBZIP43 basic leucine-zipper 43 (.1) AT3G49760 47 / 4e-07 bZIP ATBZIP5 basic leucine-zipper 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G106700 [exp] 228 / 2e-78 AT3G62420 88 / 6e-23 basic region/leucine zipper motif 53 (.1) Potri.002G196200 [exp] 102 / 8e-29 AT3G62420 182 / 3e-60 basic region/leucine zipper motif 53 (.1) Potri.014G120800 [exp] 91 / 5e-24 AT3G62420 161 / 8e-52 basic region/leucine zipper motif 53 (.1) Potri.004G158200 [exp] 82 / 2e-20 AT1G75390 152 / 8e-48 basic leucine-zipper 44 (.1.2) Potri.009G119700 [exp] 79 / 3e-19 AT4G34590 154 / 9e-49 Arabidopsis thaliana basic leucine-zipper 11, G-box binding factor 6 (.1) Potri.005G231300 [exp] 74 / 2e-17 AT1G75390 172 / 2e-55 basic leucine-zipper 44 (.1.2) Potri.002G031900 [exp] 68 / 6e-15 AT1G75390 128 / 3e-38 basic leucine-zipper 44 (.1.2) Potri.014G013400 [exp] 64 / 7e-14 AT1G59530 77 / 8e-19 basic leucine-zipper 4 (.1) Potri.005G119300 [exp] 65 / 9e-14 AT2G18160 130 / 3e-39 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016884 [exp] 116 / 5e-34 AT5G49450 80 / 8e-20 basic leucine-zipper 1 (.1) Lus10037750 [exp] 114 / 2e-33 AT5G49450 85 / 1e-21 basic leucine-zipper 1 (.1) Lus10025024 [exp] 92 / 2e-24 AT3G62420 161 / 9e-52 basic region/leucine zipper motif 53 (.1) Lus10010005 [exp] 92 / 3e-24 AT3G62420 164 / 1e-52 basic region/leucine zipper motif 53 (.1) Lus10024279 [exp] 69 / 2e-15 AT1G75390 166 / 6e-53 basic leucine-zipper 44 (.1.2) Lus10001347 [exp] 67 / 1e-14 AT1G75390 159 / 4e-50 basic leucine-zipper 44 (.1.2) Lus10041780 [exp] 64 / 3e-13 AT1G75390 135 / 2e-40 basic leucine-zipper 44 (.1.2) Lus10028333 [exp] 64 / 4e-13 AT1G75390 134 / 5e-40 basic leucine-zipper 44 (.1.2) Lus10011722 [exp] 62 / 2e-12 AT3G49760 120 / 2e-34 basic leucine-zipper 5 (.1) Lus10040428 [exp] 61 / 3e-12 AT1G75390 148 / 8e-46 basic leucine-zipper 44 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Potri.010G142900.1 pacid=42799442 polypeptide=Potri.010G142900.1.p locus=Potri.010G142900 ID=Potri.010G142900.1.v4.1 annot-version=v4.1 ATGCCACCATCCTTTGCAAAGGCAGGTTCGTCAGGCTCTGAAATTGACCCACCAAATGCTATGGTTGATGAGAAGAGAAGAAAAAGAATGATCTCAAATA GAGAATCTGCAAGGCGGTCGAGAATGAAGAGGCAAAAGTATATGGAAGATTTGGTTACTGAAAAATCTATCTTGGAGAGAAAGATATATGAAGACAATAA AAAATATGCTGCACTTTGGCAAAGGCATTTTGCTCTCGAATCAGACAACAAAGTTTTGACGGATGAAAAGTTGAAGCTGGCAGAATATTTGAAGAACTTG CAACAAGTTCTTGCAAGTTATAATGTCATTGAATCTGATCAGGATCTAGAAGTTTCAGACCGATTTTTGAACCCATGGCAAGTTCATGGTTCAGTGAAGT CCATCACAGCTTCTGGGATGTTCAAAGTTTAG
AA sequence Show only first row Show all	>Potri.010G142900.1 pacid=42799442 polypeptide=Potri.010G142900.1.p locus=Potri.010G142900 ID=Potri.010G142900.1.v4.1 annot-version=v4.1 MPPSFAKAGSSGSEIDPPNAMVDEKRRKRMISNRESARRSRMKRQKYMEDLVTEKSILERKIYEDNKKYAALWQRHFALESDNKVLTDEKLKLAEYLKNL QQVLASYNVIESDQDLEVSDRFLNPWQVHGSVKSITASGMFKV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Potri.010G142900 [exp]	0	1
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Potri.006G058600 [exp]	4.00	0.9640	Pt-PGIP.4
AT1G54870			NAD(P)-binding Rossmann-fold s...		Potri.008G149201 [exp]	4.58	0.9615
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Potri.008G141100 [exp]	5.00	0.9483
AT5G14780		FDH	formate dehydrogenase (.1)		Potri.014G161300 [exp]	6.48	0.9450	FDH1
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Potri.006G241600 [exp]	7.74	0.9249	AAT.2
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Potri.014G193800 [exp]	8.48	0.9392
AT5G25320			ACT-like superfamily protein (...		Potri.018G025500 [exp]	11.13	0.9485
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Potri.004G049800 [exp]	16.43	0.9223	Pt-GRX.2
AT1G11925			Stigma-specific Stig1 family p...		Potri.004G007200 [exp]	20.39	0.9161
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Potri.001G171600 [exp]	21.74	0.9107

Compare expression of checked genes

Potri.010G142900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.