Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79790 295 / 2e-101 AtcpFHy1 flavin mononucleotide hydrolase 1, Arabidopsis thaliana chloroplast FMN hydrolase 1, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT4G21470 44 / 8e-05 ATFMN/FHY riboflavin kinase/FMN hydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G077200 [exp] 44 / 5e-05 AT4G21470 561 / 0.0 riboflavin kinase/FMN hydrolase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020375 [exp] 269 / 2e-85 AT3G59630 560 / 0.0 diphthamide synthesis DPH2 family protein (.1) Lus10009551 [exp] 202 / 8e-66 AT1G79790 194 / 8e-63 flavin mononucleotide hydrolase 1, Arabidopsis thaliana chloroplast FMN hydrolase 1, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10040116 [exp] 40 / 0.0006 AT2G38740 347 / 3e-122 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF13419 [poplar] [flax] HAD_2 Haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.010G143000.2 pacid=42799467 polypeptide=Potri.010G143000.2.p locus=Potri.010G143000 ID=Potri.010G143000.2.v4.1 annot-version=v4.1 ATGGCAGTGGCCCTGACAGTGAGAGCAGTGCATGTCCCTCTGAAAAAAGTCCTACCAAAATCAACAAGAAATAACAACCTCAACTACAGGAAGAAGAAGA TGATGCCAATCGTTTCTTCCTTCCCCATCAGGACGGAGCAGAACGTTAATAACAGAAAGCTTCCTATACTCCTTTTTGACATCATGGACACCATTGTTCG CGACCCATTTTACCATGACGTTGCTCCTTTCTTCGGAATGTCTTTCGAGGAATTGATAGAATCCAAGCACCCAACTGCTTGGATTGAATTTGAAGAGGGG AGGGTTGATGAGATGGAGTTGGCAAGAAAATTCTTCAAAGACAAAAGATCTTTTGATTTAGAAGGCCTCAAAAACTGTATGAGGAGAGGATATTCCTATA TAGATGGTATTGAAGAGCTGCTTTGCAATTTAAAAGAAAATAACTATGAGATGCATGCTTTTACAAATTATCCTATCTGGTACAGACTGATTGAAGAGAA GCTAAATATCTCAACATATTTATCTTGGACATTTTGTTCTTGTATGATTGGAAAGAGGAAGCCTGATCCTGATTTCTATCTGGAAGTCATAAGACATCTT AAAGTTGATCCAACAAGCTGCATTTTTATTGATGACAGGTTGAGAAATGTAAAAGCTGCAATTGAAATTGGCATTAATGGCCTGCAATTCAAGAATGCAA ATTTGCTGCGTCAAGATTTGTCTAAGATGGGGATTGATATATCAACAGATGACGGCTAA
AA sequence Show only first row Show all	>Potri.010G143000.2 pacid=42799467 polypeptide=Potri.010G143000.2.p locus=Potri.010G143000 ID=Potri.010G143000.2.v4.1 annot-version=v4.1 MAVALTVRAVHVPLKKVLPKSTRNNNLNYRKKKMMPIVSSFPIRTEQNVNNRKLPILLFDIMDTIVRDPFYHDVAPFFGMSFEELIESKHPTAWIEFEEG RVDEMELARKFFKDKRSFDLEGLKNCMRRGYSYIDGIEELLCNLKENNYEMHAFTNYPIWYRLIEEKLNISTYLSWTFCSCMIGKRKPDPDFYLEVIRHL KVDPTSCIFIDDRLRNVKAAIEIGINGLQFKNANLLRQDLSKMGIDISTDDG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79790		AtcpFHy1	flavin mononucleotide hydrolas...		Potri.010G143000 [exp]	0	1
AT5G53490			Tetratricopeptide repeat (TPR)...		Potri.012G018100 [exp]	2.64	0.8446
AT5G23690			Polynucleotide adenylyltransfe...		Potri.012G105000 [exp]	9.53	0.8070
AT5G34930			arogenate dehydrogenase (.1)		Potri.008G074500 [exp]	9.79	0.7725
AT3G49140			Pentatricopeptide repeat (PPR)...		Potri.017G148600 [exp]	15.58	0.8149
AT1G22700			Tetratricopeptide repeat (TPR)...		Potri.019G085200 [exp]	16.12	0.8401
AT5G48960			HAD-superfamily hydrolase, sub...		Potri.008G205900 [exp]	16.70	0.8001
AT4G16745			Exostosin family protein (.1.2...		Potri.003G079000 [exp]	32.86	0.7664
AT4G15110		CYP97B3	"cytochrome P450, family 97, s...		Potri.006G006200 [exp]	49.47	0.7855
AT1G51310			transferases;tRNA (5-methylami...		Potri.001G259000 [exp]	52.49	0.7795
AT3G16230			Predicted eukaryotic LigT (.1....		Potri.001G186600 [exp]	58.48	0.7172

Compare expression of checked genes

Potri.010G143000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.