Plant FIBer expression Database

Potri.010G143100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G09240 362 / 2e-126 ATNAS3 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, nicotianamine synthase 3 (.1)
AT1G56430 351 / 5e-122 ATNAS4 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1)
AT5G56080 341 / 5e-118 ATNAS2 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 2, nicotianamine synthase 2 (.1)
AT5G04950 337 / 2e-116 ATNAS1 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 1, nicotianamine synthase 1 (.1)
AT4G26483 75 / 4e-17 nicotianamine synthases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G014300
[exp]
386 / 7e-136 AT1G09240 405 / 8e-143 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, nicotianamine synthase 3 (.1)
Potri.004G193400
[exp]
306 / 9e-105 AT5G04950 280 / 6e-94 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 1, nicotianamine synthase 1 (.1)
Potri.010G143133
[exp]
109 / 9e-30 AT1G56430 76 / 5e-17 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020696
[exp]
341 / 7e-118 AT1G56430 364 / 4e-126 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1)
Lus10029843
[exp]
340 / 1e-117 AT1G56430 364 / 2e-126 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1)
Lus10031416
[exp]
310 / 4e-106 AT1G56430 340 / 2e-117 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1)
Lus10010917
[exp]
308 / 1e-105 AT1G56430 334 / 5e-115 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF03059 NAS Nicotianamine synthase protein
Representative CDS sequence
>Potri.010G143100.1 pacid=42800096 polypeptide=Potri.010G143100.1.p locus=Potri.010G143100 ID=Potri.010G143100.1.v4.1 annot-version=v4.1
ATGGGTTGCCAGGAAGAGCTGTTGATAGAAAAGGTTTGTGAGATCTACGACAAACTTTCGAGGTTAGAAAACCTCAATCCTTCCAAGCAAGTTAATTCTC
TCTTCACCCAACTTGTACACACGTGTATGAGTCAATGCCACATTGAAATTACCAAATTGAATGAAAGAGTTCAAGCTATTAGGTGTAAGTTAATTAAGCT
TTGTGGGAAAGCTGAGGGCCTCTTAGAAATCCATTTCGCTACCCTCATAGGATCTCATGACAAACCACTTAACCATATCAAGATCTTCCCTTACTATTCC
AATTACCTTAAGCTCAGCCAAGTAGAGTTTTCCATGCTTAACAAAATTTGCAGTCGAGTTCCTAAACATATTGCCTTTGTGGGTTCTGGTCCTCTTCCCC
TCACCTCGATCATCCTGGCTACTAATCATTTGAGGACTACTTGCTTTCATAACTTTGACATCGACCCTTCAGCAAATGCCAAAGCCATCCAGCTGGTTTC
ATCAGATTCAGAATTGTCAAAACGAATGTTCTTCCACACTGCAGATATTATGAATGTGTCGAGCAGCTTAAAACAATATGAAGTTGTTTTCCTGGCAGCT
CTAGTAGGCATGGACAGGGAAGAAAAAGTTCGGGTCATTAAACACTTGGCCGACCACATAGCTCCTGGAACTTTACTGTTAATGAGGTCGGCAAATGGTG
CTCGAGCCTTCCTATATCCTGTCATTGATCCTTGTGATCTTCAGGGCTTTGAAATTCTATCAGTCTTTCATCCTTCGGACGATGTCATCAATTCAGTTAT
TATTGCACGTAAACATTCTCAAGGGTGA
AA sequence
>Potri.010G143100.1 pacid=42800096 polypeptide=Potri.010G143100.1.p locus=Potri.010G143100 ID=Potri.010G143100.1.v4.1 annot-version=v4.1
MGCQEELLIEKVCEIYDKLSRLENLNPSKQVNSLFTQLVHTCMSQCHIEITKLNERVQAIRCKLIKLCGKAEGLLEIHFATLIGSHDKPLNHIKIFPYYS
NYLKLSQVEFSMLNKICSRVPKHIAFVGSGPLPLTSIILATNHLRTTCFHNFDIDPSANAKAIQLVSSDSELSKRMFFHTADIMNVSSSLKQYEVVFLAA
LVGMDREEKVRVIKHLADHIAPGTLLLMRSANGARAFLYPVIDPCDLQGFEILSVFHPSDDVINSVIIARKHSQG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G09240 ATNAS3 ARABIDOPSIS THALIANA NICOTIANA... Potri.010G143100
[exp]
0 1
AT1G23390 Kelch repeat-containing F-box ... Potri.010G042900
[exp]
10.00 0.7637
AT2G25770 Polyketide cyclase/dehydrase a... Potri.018G046100
[exp]
14.00 0.8146
AT4G33985 Protein of unknown function (D... Potri.009G101300
[exp]
36.27 0.6868
Potri.012G066225
[exp]
38.88 0.7875
AT3G14470 NB-ARC domain-containing disea... Potri.012G121801
[exp]
41.71 0.7880
Potri.011G053612
[exp]
47.02 0.7507
AT1G77380 AAP3, ATAAP3 amino acid permease 3 (.1) Potri.004G174150
[exp]
56.68 0.7316
Potri.006G095100
[exp]
58.91 0.7734
Potri.007G142700
[exp]
70.64 0.7601
AT2G33150 PED1, KAT2, PKT... PEROXISOME DEFECTIVE 1, 3-KETO... Potri.001G051800
[exp]
86.71 0.7280

Potri.010G143100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.