Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16260 432 / 6e-153 Glycosyl hydrolase superfamily protein (.1) AT3G57270 347 / 2e-119 BG1 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) AT3G57240 345 / 1e-118 BG3 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) AT3G57260 338 / 7e-116 AtPR2, PR-2, PR2, BG2, BGL2 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) AT5G56590 258 / 2e-82 O-Glycosyl hydrolases family 17 protein (.1) AT5G20390 228 / 1e-72 Glycosyl hydrolase superfamily protein (.1) AT5G20340 227 / 5e-72 BG5 beta-1,3-glucanase 5 (.1) AT5G20330 218 / 8e-69 BETAG4 "beta-1,3-glucanase 4", beta-1,3-glucanase 4 (.1) AT1G32860 214 / 2e-66 Glycosyl hydrolase superfamily protein (.1) AT2G26600 210 / 3e-65 Glycosyl hydrolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G142800 [exp] 652 / 0 AT4G16260 433 / 2e-152 Glycosyl hydrolase superfamily protein (.1) Potri.001G255100 [exp] 374 / 7e-130 AT4G16260 369 / 9e-128 Glycosyl hydrolase superfamily protein (.1) Potri.016G057400 [exp] 365 / 3e-126 AT3G57270 416 / 4e-146 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.016G057600 [exp] 362 / 3e-125 AT3G57270 414 / 2e-145 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.006G048100 [exp] 340 / 9e-117 AT3G57270 382 / 6e-133 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.009G050300 [exp] 330 / 3e-113 AT4G16260 285 / 5e-95 Glycosyl hydrolase superfamily protein (.1) Potri.006G046100 [exp] 330 / 2e-112 AT3G57270 370 / 4e-128 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.009G050401 [exp] 253 / 2e-83 AT4G16260 263 / 2e-87 Glycosyl hydrolase superfamily protein (.1) Potri.005G172000 [exp] 249 / 1e-80 AT1G77780 338 / 6e-115 Glycosyl hydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016883 [exp] 396 / 1e-138 AT4G16260 391 / 1e-136 Glycosyl hydrolase superfamily protein (.1) Lus10019801 [exp] 345 / 1e-118 AT3G57270 367 / 6e-127 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014109 [exp] 341 / 5e-117 AT3G57270 361 / 1e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10002807 [exp] 327 / 3e-111 AT3G57240 339 / 7e-116 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10014108 [exp] 332 / 2e-110 AT3G57270 366 / 3e-123 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014110 [exp] 313 / 3e-106 AT3G57270 359 / 2e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10027860 [exp] 295 / 1e-98 AT3G57260 322 / 4e-109 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) Lus10031037 [exp] 280 / 5e-93 AT3G57240 312 / 3e-105 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10010091 [exp] 282 / 9e-90 AT1G02305 520 / 0.0 Cysteine proteinases superfamily protein (.1) Lus10039233 [exp] 233 / 2e-74 AT4G16260 258 / 5e-84 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Potri.010G143166.1 pacid=42798587 polypeptide=Potri.010G143166.1.p locus=Potri.010G143166 ID=Potri.010G143166.1.v4.1 annot-version=v4.1 ATGACAGGAGCTCAAGTAGGAATTTGCTATGGAATGATGGGCAACGACCTTCCTCCTGCCACAGAGGTTATAGCTCTCTACAAACAACACAATATCAAGC GGATGAGACTCTACGATCCAAATCAGGCAGCTCTGAATGCTCTCAGAGATTCAGGCATTGAAGTTATGCTAGGTGTCCCAAATTCAGATCTTCAAAGACT TTCCAACCCCTCCGATGCAAATTCATGGGTAAAAAATAATGTACTCAACTTCTGGCCAAGTGTCAGGTTCAGGTACATAGCTGTTGGCAATGAAATTAGT CCTGTCAATGGCGGCACATCCTGGATGGCCCCATTTGTTTTGCCTGCCTTGGTAAATGTATTTAATGCTGTAAGAGCAGCAGGCCTTCAGGACCAAATCA AGGTCTCAATTGCAGTTGACATGACCCTGATAGGAACTTCCTATCCTCCCTCAGCAGGTGCTTTCAGGGGTGATGTTATATCATACTTAGCCCCAATTGT TGGACACCTATCATACGCAAAGACGCCTTTATTTGCTAATATTTACACTTATTTTAGCTATTCTGATAACCCGCGAGACATTTCCCTTCCCTACGCTTTG TTTACCTCACCATCAGTACTTGTATGGGACAGTGGTCGCGGTTATCAGAATCTTTTTGATGCAATGTTGGATTCCTTGTACTCTGCCCTCGAGAGACTCG GAGGAGGTAACACTTTGGATGTTGTCGTGTCCGAGAGTGGATGGCCATCGGCAGGAGGATTCGGAACAACATCTGATAACGCAGGTACTTATCTCTCGAA TTTGATTAGGCATGTGGAAGGAGGTACGCCGAAGAGGCCTGGCAGAGCTATAGAGACTTACATATTCGCCATGTTCGATGAAAATCAGAAGCAACCAGAG TTGGAGAAACACTTTGGTGCATTCTCCCCGAATAAACAACCTAAATATAATCTCAATTTCGGAAAGAAACTGTGA
AA sequence Show only first row Show all	>Potri.010G143166.1 pacid=42798587 polypeptide=Potri.010G143166.1.p locus=Potri.010G143166 ID=Potri.010G143166.1.v4.1 annot-version=v4.1 MTGAQVGICYGMMGNDLPPATEVIALYKQHNIKRMRLYDPNQAALNALRDSGIEVMLGVPNSDLQRLSNPSDANSWVKNNVLNFWPSVRFRYIAVGNEIS PVNGGTSWMAPFVLPALVNVFNAVRAAGLQDQIKVSIAVDMTLIGTSYPPSAGAFRGDVISYLAPIVGHLSYAKTPLFANIYTYFSYSDNPRDISLPYAL FTSPSVLVWDSGRGYQNLFDAMLDSLYSALERLGGGNTLDVVVSESGWPSAGGFGTTSDNAGTYLSNLIRHVEGGTPKRPGRAIETYIFAMFDENQKQPE LEKHFGAFSPNKQPKYNLNFGKKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16260			Glycosyl hydrolase superfamily...		Potri.010G143166 [exp]	0	1
AT3G10540			3-phosphoinositide-dependent p...		Potri.010G232800 [exp]	4.69	0.7274
AT2G06090			Plant self-incompatibility pro...		Potri.003G201300 [exp]	5.47	0.6518
AT1G08670			ENTH/VHS family protein (.1)		Potri.010G204100 [exp]	7.81	0.7344
AT1G09530	bHLH	PIF3, POC1, PAP...	PHOTOCURRENT 1, PHYTOCHROME-AS...		Potri.005G001800 [exp]	11.66	0.7024	Pt-PIF3.2
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Potri.004G146000 [exp]	15.77	0.7147
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.010G055200 [exp]	17.60	0.6876
AT1G25500			Plasma-membrane choline transp...		Potri.010G128100 [exp]	22.18	0.6685
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.004G017700 [exp]	42.42	0.6415
AT2G29970			Double Clp-N motif-containing ...		Potri.009G046700 [exp]	42.52	0.6579
AT1G75490	AP2_ERF	DREB2D	Integrase-type DNA-binding sup...		Potri.005G233300 [exp]	43.47	0.6363

Compare expression of checked genes

Potri.010G143166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.