Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17000 387 / 1e-135 UBC32 ubiquitin-conjugating enzyme 32 (.1) AT1G17280 123 / 1e-33 UBC34 ubiquitin-conjugating enzyme 34 (.1.2) AT5G50430 122 / 4e-33 UBC33 ubiquitin-conjugating enzyme 33 (.1.2.3) AT3G08690 81 / 2e-18 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT5G41700 80 / 4e-18 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT5G53300 79 / 6e-18 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT4G27960 79 / 1e-17 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT1G64230 78 / 1e-17 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT2G16740 77 / 4e-17 UBC29 ubiquitin-conjugating enzyme 29 (.1) AT5G56150 76 / 1e-16 UBC30 ubiquitin-conjugating enzyme 30 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G106300 [exp] 550 / 0 AT3G17000 380 / 7e-133 ubiquitin-conjugating enzyme 32 (.1) Potri.001G162200 [exp] 129 / 5e-36 AT1G17280 371 / 9e-132 ubiquitin-conjugating enzyme 34 (.1.2) Potri.016G138900 [exp] 79 / 7e-18 AT1G64230 304 / 3e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.019G131400 [exp] 79 / 9e-18 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.006G110200 [exp] 79 / 1e-17 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.003G136200 [exp] 79 / 1e-17 AT1G64230 304 / 4e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.004G175000 [exp] 78 / 2e-17 AT5G53300 292 / 2e-103 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Potri.001G094900 [exp] 77 / 3e-17 AT1G64230 302 / 2e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.012G033000 [exp] 77 / 3e-17 AT5G53300 302 / 1e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016898 [exp] 441 / 4e-157 AT3G17000 397 / 6e-140 ubiquitin-conjugating enzyme 32 (.1) Lus10037759 [exp] 438 / 6e-156 AT3G17000 397 / 1e-139 ubiquitin-conjugating enzyme 32 (.1) Lus10003932 [exp] 127 / 4e-35 AT5G50430 368 / 2e-130 ubiquitin-conjugating enzyme 33 (.1.2.3) Lus10037459 [exp] 129 / 9e-34 AT5G50430 374 / 2e-129 ubiquitin-conjugating enzyme 33 (.1.2.3) Lus10014187 [exp] 79 / 1e-17 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10021385 [exp] 79 / 1e-17 AT1G64230 302 / 1e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10022726 [exp] 79 / 1e-17 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10027846 [exp] 78 / 3e-17 AT1G64230 289 / 3e-102 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10033937 [exp] 77 / 3e-17 AT5G53300 300 / 2e-106 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Lus10032352 [exp] 77 / 3e-17 AT5G53300 302 / 2e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [poplar] [flax] UBC PF00179 [poplar] [flax] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Potri.010G143900.1 pacid=42800239 polypeptide=Potri.010G143900.1.p locus=Potri.010G143900 ID=Potri.010G143900.1.v4.1 annot-version=v4.1 ATGGCAGTGGACAAGTATAACCTCAAAAATCCATCTGTGAAGAGGATTTTACAGGAAGTTAGAGAGATGCAATCGAGCCCATCTGATGATTTCATGAGCC TCCCTCTTGAGGAGAATATATTTGAGTGGCAATTCGCTATAAGAGGACCAGGAGAGACTGAATTTGAAGGAGGGATTTATCATGGGAGGATTCAATTGCC TGCTGAGTATCCATTTAAGCCTCCTTCTTTTATGTTGTTGACGCCAAATGGGCGTTTCGAAACGCAGACGAAGATATGCTTAAGCATATCAAATCATCAT CCTGAGCATTGGCAGCCATCGTGGAGTGTACGAACAGCTCTACTAGCACTTATTGCATTCATGCCTACTAGCCCAAATGGTGCATTGGGCTCACTAGACT ACAAGAAAGAGGAAAGGCGTGTTTTGGCTGTTAAATCTCGTGAAGCAGCACCAAGATTTGGGACTCCTGAACGTCAAAAACTCATTGATGAGATTCATCA ATACATGCTTGGTAAGGCACCGTCTGTTCCTCAACAAAACTCAGTGCAGGGTTCTGAAGAACACCCTGGCAACAATGAGGGGGAAGCCCAGGCGCAAGAT GCTGGAGTAGTTGCTGCTGCTGAAGAGCTTCCAAATCCAGCAGTTGGTGAAATTCAGGAAGTAGGTGAAAGGGTCATCGAAGAAGTGCATGAAGCTCCTG TTAATGTGAACCCTAGTCCTACAGGAACCAGTGTATCCAGAGAGATTCCTGCTAGAGGCCCAACTGATCAGCTACTGCAAAGGCCAGTGACCAGGGTTCA GAAACCAGCTGATGATCGGTTGTTCACATGGGCTGCTGTTGGACTAACCATTGCGATTGTGGTTCTTTTGCTGAAGAAGTTTATGAAATCTAGCGGATAT GGCGCTCTCTTCATGGATGGATCTTAG
AA sequence Show only first row Show all	>Potri.010G143900.1 pacid=42800239 polypeptide=Potri.010G143900.1.p locus=Potri.010G143900 ID=Potri.010G143900.1.v4.1 annot-version=v4.1 MAVDKYNLKNPSVKRILQEVREMQSSPSDDFMSLPLEENIFEWQFAIRGPGETEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHH PEHWQPSWSVRTALLALIAFMPTSPNGALGSLDYKKEERRVLAVKSREAAPRFGTPERQKLIDEIHQYMLGKAPSVPQQNSVQGSEEHPGNNEGEAQAQD AGVVAAAEELPNPAVGEIQEVGERVIEEVHEAPVNVNPSPTGTSVSREIPARGPTDQLLQRPVTRVQKPADDRLFTWAAVGLTIAIVVLLLKKFMKSSGY GALFMDGS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Potri.010G143900 [exp]	0	1
AT5G61520			Major facilitator superfamily ...		Potri.004G233500 [exp]	4.24	0.9231
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Potri.018G081200 [exp]	5.38	0.9235
AT5G16990			Zinc-binding dehydrogenase fam...		Potri.007G142400 [exp]	6.40	0.8823
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.006G036000 [exp]	7.34	0.9213
AT3G60070			Major facilitator superfamily ...		Potri.001G232100 [exp]	8.71	0.9040
AT1G53440			Leucine-rich repeat transmembr...		Potri.003G026325 [exp]	13.60	0.9148
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.016G017232 [exp]	14.56	0.9207
AT1G02260			Divalent ion symporter (.1)		Potri.017G141800 [exp]	19.07	0.9141
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.016G017166 [exp]	20.78	0.9140
AT3G07700			Protein kinase superfamily pro...		Potri.014G168600 [exp]	21.49	0.9020

Compare expression of checked genes

Potri.010G143900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.