Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17030 764 / 0 Nucleic acid-binding proteins superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G105850 [exp] 107 / 8e-28 AT3G17030 62 / 1e-12 Nucleic acid-binding proteins superfamily (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016902 [exp] 813 / 0 AT3G17030 699 / 0.0 Nucleic acid-binding proteins superfamily (.1) Lus10037764 [exp] 723 / 0 AT3G17030 671 / 0.0 Nucleic acid-binding proteins superfamily (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G144400.1 pacid=42797785 polypeptide=Potri.010G144400.1.p locus=Potri.010G144400 ID=Potri.010G144400.1.v4.1 annot-version=v4.1 ATGGACATAGAAAATCAAGACCCGTTTCAAGCATTCATCGATCACGCCAGGTCCGTTTTATCTCCCGTTGAAGGCGACGAAGATGAAGAAATTTACGATC CGAGTACAAACGGATCTGAGTCCACCGGACCGGGTTGGAGCTGGATCGCGAGTCGGATCCTCAAAACTTGTATCGCTTACTCAAGTGGTGTCACTTCTGC TATTCTCCTTTCAGATCTCTCTCAAGCGTGGAGCGAGCAACGGCGGAGCGGCGTATCGAAGAAGAGACCGGAAATCATCAGTCATTTAAAGAAGAAACAC AGGAGAAATAAGTTAGCAAATACCGTGACTATTGATTCTGTTTATGAGAAGAATTTTCTGTCTTTAAATAGTGTTTTGGAAGCTGTTATTGTCGATGCTT TTGTTCTACCAGGGACGAATATTTATATGCTTACTTTAGGGGATTTTTGGAGCTCGAATACTATCGAACTTTATCTCCACCGAAGATACTATGACTTGGT GGATCCTCACAGTGGGATTTTGAAAAGAGGGAGGGAAATTTTCCTCACAGGATGCTATCTTCGAACAGCCAGAGAAGGAGCTGGTTCTACCCGGCTTTTG CCGACAGAATATCTTGTGATATTGTTAGATGATGATCAGGATGATGATGCTATGCTGATAGCAGCTCAGTTTTGTTCAGATTCTTTCTCTTCCATTTCGT TTAATGAGGCAAGCACCGGGGTTCCGTATTCATTATATGCAAGGATCGAATCTATTCAGTCAAAGGAAATTCAAGGAATATCTGGTAGTGTAAAGAGGAA AGAAATCACTCTTGTTGATAACGATGGTGTCAGGCTAGAATTTCTCTTGTGGGGAGAGCAGGTTCTCCTTGCCAATCTTTTCAGTGTTGGAAGTATGCTT GCACTTGATAGACCATATATTGCAAGTTCTGCAGAGAGTGCCATTGAAACAAGCCATGAACTTTGTCTTGAATATGGTAGTGCAACACAACTGTTTTTGG TACCTTTCCTGCAACACGAGGAACAGGTATATATACCTTCGACACAGAACCGATATCAGGGCTCAAGACTGATGAGTACGGTAGATCCTGCTCAGGGTTT TAAGGTTTCACAAGTGGCATTGCCCTGTGATTCTCAGGGGTCCGTTGACTTCAGTAGCTATCCTTTTCAATCATTTGTAACTGACCTTCATGACAAGATG ACCAGCGTCAGCCTCTATGGTGTTGTTACAGACATTTTCCGTGAAAGAAACACTCCAGAAGTTATTTTCTCCTTAAAAATTGAAGATGCAACGGGAGCAA TTTGGGCAAAGCTACACTTTGCTAGATCCTGGTCATTTGGGAGATTGGGTATTGGTCACACAGTATATTTAGCTGGATTGTCGTGCCATTTGAGAAAACA TAGTGGCCTTGAAGCAACATGGTATGATAATGCAGCAGGGGCCTTCTTCGTAAACCTTAGTTGCTTGCCAGCATTGCTGAACTCGTCTTGTCTTCATAAG TTGTCATGCCTCTCTGATCTATCCAGTGAAGCCAGTTGTACATATATTTGTCGAGTTCGACTTGACCAAGTTGATCAGTGTCATGTGAATACAAGATTTT CACATTCTCTTTGTGGTCATGTTGTCAACAAGATGCCTAGTGGGGATGTTGAATGCAGCTTCTGTCATTGTAATTGTGATGCTGAAGTTGTGCGCACATT CCACCTGAAAATCACTCTTGCAGATGAGACTGGAAAGATGTTTGCTTGGTGCATCGGTCAAACTGCTACAGAGTTGCTTCAGATATCCCCCGATGAATTT TATGATCTTCCCGAGGATGAGCAATTCATGTATCCTTCATCTCTAGAGAATGAGAGCTTCATAGTTGCATTAGTGAATTGCCAGGGGCAGGGTTATGGAT TCAGTCAGAGTATAACCCAGGAGGCTGATGCAATTCCGTGGGAGATCACTCGTGCATTAAGGTGTGAATAG
AA sequence Show only first row Show all	>Potri.010G144400.1 pacid=42797785 polypeptide=Potri.010G144400.1.p locus=Potri.010G144400 ID=Potri.010G144400.1.v4.1 annot-version=v4.1 MDIENQDPFQAFIDHARSVLSPVEGDEDEEIYDPSTNGSESTGPGWSWIASRILKTCIAYSSGVTSAILLSDLSQAWSEQRRSGVSKKRPEIISHLKKKH RRNKLANTVTIDSVYEKNFLSLNSVLEAVIVDAFVLPGTNIYMLTLGDFWSSNTIELYLHRRYYDLVDPHSGILKRGREIFLTGCYLRTAREGAGSTRLL PTEYLVILLDDDQDDDAMLIAAQFCSDSFSSISFNEASTGVPYSLYARIESIQSKEIQGISGSVKRKEITLVDNDGVRLEFLLWGEQVLLANLFSVGSML ALDRPYIASSAESAIETSHELCLEYGSATQLFLVPFLQHEEQVYIPSTQNRYQGSRLMSTVDPAQGFKVSQVALPCDSQGSVDFSSYPFQSFVTDLHDKM TSVSLYGVVTDIFRERNTPEVIFSLKIEDATGAIWAKLHFARSWSFGRLGIGHTVYLAGLSCHLRKHSGLEATWYDNAAGAFFVNLSCLPALLNSSCLHK LSCLSDLSSEASCTYICRVRLDQVDQCHVNTRFSHSLCGHVVNKMPSGDVECSFCHCNCDAEVVRTFHLKITLADETGKMFAWCIGQTATELLQISPDEF YDLPEDEQFMYPSSLENESFIVALVNCQGQGYGFSQSITQEADAIPWEITRALRCE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17030			Nucleic acid-binding proteins ...		Potri.010G144400 [exp]	0	1
AT5G10110			unknown protein		Potri.005G077400 [exp]	4.12	0.8533
AT2G38720		MAP65-5	microtubule-associated protein...		Potri.003G192400 [exp]	9.94	0.8301
AT3G02820			zinc knuckle (CCHC-type) famil...		Potri.010G097400 [exp]	10.77	0.7515
AT4G13690			unknown protein		Potri.003G177900 [exp]	10.77	0.8303
AT3G07800			Thymidine kinase (.1)		Potri.002G222300 [exp]	12.84	0.8263
AT5G16690		ORC3, ATORC3	origin recognition complex sub...		Potri.013G077200 [exp]	13.03	0.7671
AT5G65360			Histone superfamily protein (....		Potri.005G233900 [exp]	13.56	0.8288
AT1G14900		HMGA	high mobility group A (.1)		Potri.010G109600 [exp]	13.74	0.7984
AT1G57820		ORTH2, VIM1	VARIANT IN METHYLATION 1, ORTH...		Potri.003G162400 [exp]	16.52	0.7584
AT4G16807			unknown protein		Potri.003G080700 [exp]	17.66	0.7355

Compare expression of checked genes

Potri.010G144400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.