Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23060 224 / 2e-69 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) AT4G37580 221 / 2e-68 UNS2, COP3, HLS1 UNUSUAL SUGAR RESPONSE 2, HOOKLESS 1, CONSTITUTIVE PHOTOMORPHOGENIC 3, Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT5G67430 197 / 4e-59 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT2G30090 175 / 7e-51 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G044100 [exp] 248 / 1e-78 AT4G37580 372 / 4e-127 UNUSUAL SUGAR RESPONSE 2, HOOKLESS 1, CONSTITUTIVE PHOTOMORPHOGENIC 3, Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.003G182500 [exp] 241 / 8e-76 AT2G23060 368 / 3e-125 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.009G074200 [exp] 236 / 2e-74 AT2G30090 383 / 6e-132 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.001G279400 [exp] 230 / 5e-72 AT2G30090 374 / 2e-128 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.005G146100 [exp] 224 / 2e-69 AT2G23060 609 / 0.0 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.007G054200 [exp] 217 / 1e-66 AT2G23060 597 / 0.0 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016904 [exp] 365 / 1e-124 AT4G37580 181 / 3e-53 UNUSUAL SUGAR RESPONSE 2, HOOKLESS 1, CONSTITUTIVE PHOTOMORPHOGENIC 3, Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10002468 [exp] 219 / 2e-67 AT2G23060 589 / 0.0 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10026088 [exp] 219 / 3e-67 AT2G23060 369 / 1e-125 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10025191 [exp] 204 / 2e-61 AT2G23060 584 / 0.0 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10002314 [exp] 195 / 8e-59 AT4G37580 335 / 3e-113 UNUSUAL SUGAR RESPONSE 2, HOOKLESS 1, CONSTITUTIVE PHOTOMORPHOGENIC 3, Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [poplar] [flax] Acetyltrans PF00583 [poplar] [flax] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Potri.010G144700.1 pacid=42797331 polypeptide=Potri.010G144700.1.p locus=Potri.010G144700 ID=Potri.010G144700.1.v4.1 annot-version=v4.1 ATGAGTGGCAGTATAGAGAACAAGGTTGTAATAAGGGAATACAATGAAGACAGGGATATTAAAGTGGTGGGGAAGCTTGAGAGGAAGTGCGAGATAGGAT CTAATAAGGAAGTCTCCATTTTCACCAACATGATGGGCGACCCTCTATCTAGGATTAGGTTCTATCCTGTTCATGTTATGCTGGTTGCCGAGCTGCGTGA AAATGGGGAACTTGTCGGTGTAGTTAAAGGATGCATCAAATGTGTGGGGACTAGATTTGGAGCATCATATGTAAGGTTGGGCTGCATCCTAGGCCTTCGA GTTTCTCCTAGACATCGACGAATGGGGATCGGGCTGGAACTTGTCAAGTCAGTTGAAGAATGGCTGATAGGAAATGGGGCACACTATACTTTCCTAGCAA CTGAAAAGAACAATGTGGCCTCTACGAATCTCTTCACTTCCAAGTGCAATTACATGAACTTTACCTCGTTGGTCATATTTGTTCAACCAGCCAGTCTTCC TGTAAAGGGCCTGTCTCAAGACATAAAAATAGAGAAGCTGCAAACAGACCAGGCCATTTATTTGTACAACAATAAGTTCAAGAGCAAGGACATATATCCA ACCGACGTTGATGCTATCTTGAAGGAAAAGCTGAGCATTGGTACATGGGTATCTTATTTTAAAGAAGAGGAATGGATTAGTTTGCACAGTAATGAAAGGA ATGAAGACATCATCACTAGAACTCCAAGTTCTTGGGCTATGTTTAGCATATGGAATTCTTGTGAGGCATACAAGCTTCATATAAGAAAGTCTCACCATCC GTTCAAGTTTTTTCACGCAACTTTAAGCCATGCAAGAGATAAGATTTTCCCTTGCCTTAAATTCCCAATATGTCACTCGCTACAGAAACCATTTGGGTTC CTCTTTCTGTTCGGGCTTTATGGAGAGGGAGAGAGGCTCCAAGAGCTCATGAAATCCATATGGAGCTTTGCATCAAGATTGGCTGAAAATGTGAAGGACT GCAAGGTTATTATTAGTGAGCTAGGGGTCTCTGATCCTCTAATAGAGCATGTGCCCCAAGAATCCTCCATGTCTTTCATCAATGACCTCTGGTACCTGAA GAAAGTGAATGACAATATCACTGATGACAACGAGGAACCCGTGGTCATGGGGCAAGTAACAGGGAATGTATTTGTTGATCCAAGAGACTTTTAG
AA sequence Show only first row Show all	>Potri.010G144700.1 pacid=42797331 polypeptide=Potri.010G144700.1.p locus=Potri.010G144700 ID=Potri.010G144700.1.v4.1 annot-version=v4.1 MSGSIENKVVIREYNEDRDIKVVGKLERKCEIGSNKEVSIFTNMMGDPLSRIRFYPVHVMLVAELRENGELVGVVKGCIKCVGTRFGASYVRLGCILGLR VSPRHRRMGIGLELVKSVEEWLIGNGAHYTFLATEKNNVASTNLFTSKCNYMNFTSLVIFVQPASLPVKGLSQDIKIEKLQTDQAIYLYNNKFKSKDIYP TDVDAILKEKLSIGTWVSYFKEEEWISLHSNERNEDIITRTPSSWAMFSIWNSCEAYKLHIRKSHHPFKFFHATLSHARDKIFPCLKFPICHSLQKPFGF LFLFGLYGEGERLQELMKSIWSFASRLAENVKDCKVIISELGVSDPLIEHVPQESSMSFINDLWYLKKVNDNITDDNEEPVVMGQVTGNVFVDPRDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23060			Acyl-CoA N-acyltransferases (N...		Potri.010G144700 [exp]	0	1
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Potri.011G025000 [exp]	2.00	0.9828	Pt-ATML1.1
AT4G00820		IQD17	IQ-domain 17 (.1)		Potri.015G005900 [exp]	2.23	0.9693
AT5G03790	HD	LMI1, ATHB51	LATE MERISTEM IDENTITY1, homeo...		Potri.006G117700 [exp]	2.82	0.9563
AT1G60060			Serine/threonine-protein kinas...		Potri.010G096400 [exp]	3.87	0.9484
AT4G14723		EPFL4, CLL2	epidermal patterning factor li...		Potri.008G157300 [exp]	4.00	0.9719
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G227400 [exp]	4.58	0.9736
AT2G30370		EPFL6, CHAL	EPF1-like 6, CHALLAH, allergen...		Potri.013G155500 [exp]	4.89	0.9528
					Potri.004G013750 [exp]	5.09	0.9306
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Potri.001G169100 [exp]	6.92	0.9314
AT2G47630			alpha/beta-Hydrolases superfam...		Potri.002G204200 [exp]	8.06	0.9522

Compare expression of checked genes

Potri.010G144700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.