Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17040 798 / 0 HCF107 high chlorophyll fluorescent 107 (.1.2) AT4G03430 71 / 2e-12 EMB2770, STA1 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) AT5G45990 67 / 2e-11 crooked neck protein, putative / cell cycle protein, putative (.1) AT3G51110 62 / 8e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13210 62 / 9e-10 crooked neck protein, putative / cell cycle protein, putative (.1) AT5G41770 59 / 7e-09 crooked neck protein, putative / cell cycle protein, putative (.1) AT4G37460 47 / 4e-05 SRFR1 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11964 47 / 6e-05 RNA binding;RNA binding (.1) AT5G28740 45 / 0.0002 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G135300 [exp] 83 / 3e-16 AT4G03430 1470 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) Potri.001G094400 [exp] 72 / 9e-13 AT5G41770 1117 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Potri.003G137200 [exp] 64 / 3e-10 AT5G41770 1150 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016906 [exp] 830 / 0 AT3G17040 761 / 0.0 high chlorophyll fluorescent 107 (.1.2) Lus10037766 [exp] 820 / 0 AT3G17040 753 / 0.0 high chlorophyll fluorescent 107 (.1.2) Lus10018580 [exp] 70 / 4e-12 AT4G03430 1566 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) Lus10039811 [exp] 67 / 3e-11 AT4G03430 1560 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) Lus10041477 [exp] 66 / 1e-10 AT5G41770 1161 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10034294 [exp] 64 / 3e-10 AT5G41770 1153 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10041573 [exp] 46 / 0.0001 AT5G28740 1386 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022346 [exp] 44 / 0.0006 AT5G28740 905 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF07719 [poplar] [flax] TPR_2 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.010G145000.1 pacid=42797488 polypeptide=Potri.010G145000.1.p locus=Potri.010G145000 ID=Potri.010G145000.1.v4.1 annot-version=v4.1 ATGCACCTCTTCTCTCCTTCCTCTTCCTCTTCTACTTCGAAAGCAACTTTCACTCTCTTCTCTCCCTCTCAAAACCCCAATAACAACTCCAAACTCTACT TCAAAGTCCATACCAAAACAAGAACAACTATACCATGTTCCTCTAAGGAATCCCCTCCTGTTCTAGACCCAAAACCTCTCTCCTTAGAATCATCGAGAAC CAGTGAGCTTAGCAACCGGGAAAGCAATGTTGTTATTGAATCAAAGAGAGATTCTTTGGAGGGAATGCTGGTTGTTCGCCGGCCGGAAATGGAGGTTCCC GGTGAGGATTCCGGCGAGAGTAGTGAGAAACAGAGCGATGATGATAACACTAAATCCTTGACAATCATTGATGTGGGCCTTGAGGAGTTTGCAAAAAAGA TGCCAATTTTTGAGCCAGAGAGAGTGGGGTCCTCTGGTTCCGGTCCTCAAGAGAAGCCACTTGTTGTGAATTTGGACTTGGCTTTGTATAAGGCCAAGGT GTTAGCTAGGCGTTTTAAGTATAAAGAAGCTGAGGAGATACTGCGAAAGTGTATTAGTTATTGGCCTGAAGATGGGAAGCCATATGTGGCATTAGGGAGG ATATTGGGCAAGCAATCAAAATCAGAAGCAGCAAGAGCTGTGTATGAGAAAGGGTGCCAGGCAACTCAAGGAGAGAATCCTTACGTTTGGCAGTGCTGGG CTGTTTTGGAAAATAAAATGGGTAATATTAGGAGAGCAAGAGAGTTATTCGATGCCGCCACAGTTGCTGATAAAAGACACGTAGCTGCTTGGCATGGTTG GGCAATTCTAGAGCTAAAACAGGGAAATGTTAAGAAGGCAAGGCAATTACTTGCTAAAGGCCTTAAGTTTTGTGGTGGAAATGAGTATGTTTACCAGACA CTGGCACTTTTGGAAGCTAAAGCAAATCGATATAAGCAGGCTCAATACTTGTTCAGGCAAGCAACTAAGTGTAATCCAAAAAGCTGTGCCAGTTGGCTTG CATGGGCACAACTAGAAATGCAACAGGAGAACAATCTTGTCGCAAGGAAACTCTTTGAGAAAGCAGTACAAGCAAGCCCTAAGAACAGATTTGCATGGCA CGTATGGGGAGTTTTTGAAGTTAATATTGGAAATATTGAGAAAGCAAGAAAACTTTTAACGATAGGCCACGCACTTAATCCAAGGGATGCTGTTCTGCTT CAGTCTCTTGCTTTATTGGAATATAGACATTCTACTGCAAATCTTGCGCGAGTATTGTTCAGGAAAGCATCTGAATTGGACCCAAGGCACCAACCCGTTT GGATTGCTTGGGGATGGATGGAATGGAAAGAAGGCAACATATCCACTGCGAGGGAGTTATATCAAAAGGCTCTTTCAATTAACACAACCACTGAAAGTGC AGCTAGATGTCTACAGGCTTGGGGTGTCCTAGAACAAAGAGCTGGTAACCTGTCCGCAGCTCGAAGATTGTTTAGATCATCCCTGAATATAAATTCTCAG AGTTATGTAACATGGATGACATGGGCACAGTTGGAGGACGATCAAGGAAACAGTGTGCGTGCTGAGGAAATTCGGAACCTCTACTTTCAACAGCGTACCG AAGTTGTAGATGACGTCCCATGGGTTACAGGATTTTTAGATATCCTTGACCCAGCAGTTGACAGCATAAAGAAGCTCCTGAACATGGATCAGGACCCGTA CAAGAAGGCACAGGAAGCTTTGAGAAATATATCAAGAGGTAAAGAAAAAGGTGTCGATGACAACTCAGCCGGTAATCCATCCTCTAACAGCTTTGGCAAT GATAAAGAAGGTAGGGGTAGTGGACTGGATTTGGATTCCTTCATTAAAGAAAGGTTGTCTCTTGATGCAACCAAGTTTGATGTCAACCTGGAAACATCTG CTGCAAATCCGGCCCCATGGAGAGGCAAGTCACCAAGAAGTATATGGAAACCAGTAAAAAGCAATCGCAAAAACGTTGCCAAATTCTAG
AA sequence Show only first row Show all	>Potri.010G145000.1 pacid=42797488 polypeptide=Potri.010G145000.1.p locus=Potri.010G145000 ID=Potri.010G145000.1.v4.1 annot-version=v4.1 MHLFSPSSSSSTSKATFTLFSPSQNPNNNSKLYFKVHTKTRTTIPCSSKESPPVLDPKPLSLESSRTSELSNRESNVVIESKRDSLEGMLVVRRPEMEVP GEDSGESSEKQSDDDNTKSLTIIDVGLEEFAKKMPIFEPERVGSSGSGPQEKPLVVNLDLALYKAKVLARRFKYKEAEEILRKCISYWPEDGKPYVALGR ILGKQSKSEAARAVYEKGCQATQGENPYVWQCWAVLENKMGNIRRARELFDAATVADKRHVAAWHGWAILELKQGNVKKARQLLAKGLKFCGGNEYVYQT LALLEAKANRYKQAQYLFRQATKCNPKSCASWLAWAQLEMQQENNLVARKLFEKAVQASPKNRFAWHVWGVFEVNIGNIEKARKLLTIGHALNPRDAVLL QSLALLEYRHSTANLARVLFRKASELDPRHQPVWIAWGWMEWKEGNISTARELYQKALSINTTTESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQ SYVTWMTWAQLEDDQGNSVRAEEIRNLYFQQRTEVVDDVPWVTGFLDILDPAVDSIKKLLNMDQDPYKKAQEALRNISRGKEKGVDDNSAGNPSSNSFGN DKEGRGSGLDLDSFIKERLSLDATKFDVNLETSAANPAPWRGKSPRSIWKPVKSNRKNVAKF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17040		HCF107	high chlorophyll fluorescent 1...		Potri.010G145000 [exp]	0	1
AT3G15354		SPA3	SPA1-related 3 (.1)		Potri.001G399600 [exp]	1.00	0.9676	Pt-SPA3.1
AT1G06040	CO	BBX24, STO	SALT TOLERANCE, B-box domain p...		Potri.017G028301 [exp]	3.00	0.9588
AT2G31380	CO	STH	salt tolerance homologue (.1)		Potri.017G028300 [exp]	5.91	0.9513	Pt-STH.1
AT5G07900			Mitochondrial transcription te...		Potri.001G035200 [exp]	8.60	0.9639
AT4G24930			thylakoid lumenal 17.9 kDa pro...		Potri.015G097700 [exp]	11.66	0.9494
AT2G32480		ARASP	ARABIDOPSIS SERIN PROTEASE (.1...		Potri.014G154000 [exp]	13.41	0.9571
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Potri.010G193300 [exp]	13.60	0.9528
AT5G08720			unknown protein		Potri.005G070700 [exp]	14.14	0.9221
AT1G75100		JAC1	J-domain protein required for ...		Potri.002G134300 [exp]	16.24	0.9338
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Potri.001G253300 [exp]	16.61	0.9526	Pt-AGT.2

Compare expression of checked genes

Potri.010G145000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.