Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58040 103 / 5e-22 FIP1[V], ATFIP1[V], FIP1[V], ATFIP1[V], FIP1[V], ATFIP1[V], FIP1[V], ATFIPS5, ATFIP1[V], FIP1[V], A homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1) AT3G66652 97 / 4e-20 fip1 motif-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G187400 [exp] 108 / 1e-23 AT5G58040 355 / 1e-102 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1) Potri.018G110100 [exp] 107 / 2e-23 AT5G58040 355 / 1e-102 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016905 [exp] 179 / 1e-45 AT3G66652 90 / 6e-18 fip1 motif-containing protein (.1.2) Lus10019610 [exp] 98 / 2e-20 AT5G58040 412 / 6e-127 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1) Lus10040030 [exp] 93 / 1e-18 AT5G58040 389 / 5e-117 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05182 [poplar] [flax] Fip1 Fip1 motif
Representative CDS sequence Show only first row Show all	>Potri.010G145150.1 pacid=42797008 polypeptide=Potri.010G145150.1.p locus=Potri.010G145150 ID=Potri.010G145150.1.v4.1 annot-version=v4.1 ATGGATGATTTAACAGGTGATGATTTCGGTGATTTATACTTAGATGTTGTGATTCAAGCGAGTTCAGTTATCAATTCATTACCAAACTCCAGTAATTTAT ATACAGAATCAGAATCACATCAAGGAAATGAAGGCAGTGATCATAACAAAGTTAATCAAAGCGAAAAAGAAGAGAACCTGGTGTCGGAGTCCAAGGAATT AAACAAAGAGAAGTTGGGGGTTTTGGAGGAGGTTGGTGATGGGAGTGATAGTGAAGATGATCTGAATATTGTTTTGAATGATGAGGATTGTAAAGGGTTT GAAGTTGGCAGAGCAAGGAACGGTAATGGTAATGGCGGTGGCGGTTTCGAGGAGGAAGAAGGGGAGGGTGGTGGTTTTGTTGGTGCTAAAAATGGAGTAG AATGTAGTGCTAGTGGGAATGGAGTAAAGGGTATTCATCACTTGCCGCATTTGCATTATAAGAATGTAAGACCTTATGGATCATCATTTCCGAGCAATAA AAAAGGCAATGAATCTGCTGGGGTGGCATCTCGTTCTTCTAGCTCTGCTAGAGGTAATTGGGAAGATAACAGGTGCAAGCAACACAAGGTAAATTCAGGC CGGGTTGCTAATTTTCATGCTACAACCAATTCAGTACTATCTCATGGTGGATATGGTTACTCACTTCCATGGTATAGGAGTATACTAGATGTAAATATTG ACGCATTTGAAGAAAAGCAATGGAGGTATCCTGGAGTTGATATATCCAATTTCTTCAATTTTGGTTTCAATGAGGATAGCTGGAAACAGTACTGCATGTC ATTGGAGCAATATGGGCAACAGTCTTACATGCATGGTGCAATGTCAATTCTTCATTCTTCAAAATCTACCCAGCGAAAAGGCAGAGCAATTCAGGTTGAA GACAGCACTGGTGAACGTCAACCAACCATGGATCTAAGGCGTCCACGTGTTTGGGATTCTGATGTTGTTATAAAGATCAATGTGCAGGACTCCAATGACA ATTCCTCTCAGTCCAGCATGGAGCAATCAAGCCATATAGATAGCAATGAACCCGGAGCATCAAAAAGAAGGGATTTAAATGTTGATGATAAAAGAGATGC CTGCTCTTCTGGTAGTGCCAGTAGAGATGAACCCTCTGCGGAGTCTCTGGAAGGAAATCTCAGGTGTTTCCAGTCAATGTCGGTGTCCAATAAAATGTCT CCGAATACTGATAATTATGAAGCCAACCAGATTTCTAATGCGGATGGGTATCACCATCAAAAGGAAAATGCCCATTCTTCAGAAGGCATTGCTGAAAAAA TGGAAACTGTAGACGAGGAAGAGGAAGAAATTGACAGGAAGGAGTGCAAGTCAGATCAATTTCTGAGCGAGCCAGAACTATCACTGAGTGATTACAGTTA TTTTAGCCCAAGTCTATCCTACTCTGACAGTGATTCTGAAGCATCCAGAGACAATATCTGTCATACTCTCAAAGATTCTCCTGGTCCCTTAAGAAAGCCA TCTTTGGGCACCAAGTTACAGGAATCTGTTACGTCTAACCATAAGAGCCCTAAAAGAAATGGTGTTATAAGAACATCAGGTATCCAAAATTGTTCAAGTC ATAAAAGACCTGTTTGGGAGGAAAGGAAGGATCACAATCGGAGACTCCATAGAGTTCCTGAATGGAGGATCCTTCCTAATAATGATAGCTATACCTCTCC CACACTTAGGGATCGCTCATCCCTTGATTGTAGCAGACAGATTGAAAATCTGCATGATTTTGATTATCGAAATGGAGAAGATTTCTCTTATAGTCAGCAG AAAGACTCTTCTTGTGGTTACAATGGTAAAAGGTGCAGGGATGACCATGCTCAGGCTGTTTACAAAAAACAGTGTCATAGAAAATATAATCACAGCTTTA AAGATGAGATGATTCCACAGAACAGAAGGGATTGGAATGAGAAGGAATTTTTCCATGAACGAAGCTGTAGAATAGATGATCAAGATACGTGCAAAGATTT GTATGGTTCTGGAAGAGGACTCTTTCCGGAGGACGTGATTCCTCCCACTTATTGGAGGACAAGACATTTGGTTTCCAAGTTCAACAATCACAAAGAGAGA GAAATTCTATGGAAAAGGAAGAGTGGAAACATCCAATTTCAGAAGAGCACTCACAGTATGCGCTTGCTTGGTCATGAAAATGAAGATGACTTAATGCAAG AAAATTGTGGAAGATCTATTCCACTGGCCAACCAGAAAAGGTTTTCTTTGAATGAAAAATGTGAAAGGCGCAACTTTATTGGGAGAGAAGGGAATCCTTC CAGTAGAAGGGTTAAATATGGCTGTGATCCCCGTATGGATTTGAATAGTTCATGGAACATGGAAACTGAAGAAGATTATTGTGATCCACTTCATCAACAT TTTTTCTCCAAGTATCAGAGGGAAACTTATGAATCCAATGATGGAAGGTGGCAGGAGAAGTTGCCGTCAAGAAGTGTTATGTTCAACTCCAGATTAACTG AAAGATATAGGAGACCAAAGAGACGAATATGCATCAGGGAAGGCCAGGATCGTGGTTGGGATGGTAGTTTTAACGATACCTTTGATGCTGAAGATGGTAT CATTTATCCTGACGATCAGGTTCATTTGGAGAGGAGAAAATATAGCAGGAGATCTAGAGTACTTAAGTGGAAACAGGATGAATCTATTTTAAGGCATCAT GTTGGCGATTTTTATGTTGAAAGGAAACCATGTTTCTATGGAGTAACTTCAACACATGAAAAAATTCATGCTAAACATAGATCTGCCACTGGTGGGGTGG TGGTTAATGGTATGGATTTTAGCCGGCATAGCTACAAAATGATCAGAGAAGGAAGTAATGCTAGGTGTGTCAATAGAAATCCTGGTAGGATGTATAGAAG GGGGCATGAGAAGATGGTCAGGAGGTGCTGTGATCCAGTTGACTTGAATGTTGGAGAAGTAAAGAAAAGTATGTTTAAAAGGATGGATCTGAAGTTTGCC AAGGAGCCAATGTGTTCGAAGGATTTCAATGAATCCCAGACAGGAATCCAAACTGATGTTCTTGAAACCGGAGGCGATGATAAAGAGAAATGGATCGGTA AATCTCAAGTTACTGAGCACAATGAAAAATTGAACATTGAAGACGGCCAGATAATGGCAGAAGAATCAAGCATGGAAAGCAAGTTGGCAAAAAAATGTGC TTTTAAAAGTGTGGTTCCAACTTGCAATGCGAAGAATAGAAATTTTCTCTGTGAAAATGCTTCCAGTAGAAACAAGAATGATGGGGCAGTTGACAGTAAA CGGATACTGGACACGATAGCAAAGATGGAAAAACGTAGGGAGCGCTTTAAGGATCCAATTGCACAGAAAAAGGAACTGGACAAGACTTCCGAACCCCAAG TCGAAGTCATAATCGATACAGTTCCAGCTAACCAAGATAGGCCAGCCAGAAAAAGACGATGGGGTGGAACTTAG
AA sequence Show only first row Show all	>Potri.010G145150.1 pacid=42797008 polypeptide=Potri.010G145150.1.p locus=Potri.010G145150 ID=Potri.010G145150.1.v4.1 annot-version=v4.1 MDDLTGDDFGDLYLDVVIQASSVINSLPNSSNLYTESESHQGNEGSDHNKVNQSEKEENLVSESKELNKEKLGVLEEVGDGSDSEDDLNIVLNDEDCKGF EVGRARNGNGNGGGGFEEEEGEGGGFVGAKNGVECSASGNGVKGIHHLPHLHYKNVRPYGSSFPSNKKGNESAGVASRSSSSARGNWEDNRCKQHKVNSG RVANFHATTNSVLSHGGYGYSLPWYRSILDVNIDAFEEKQWRYPGVDISNFFNFGFNEDSWKQYCMSLEQYGQQSYMHGAMSILHSSKSTQRKGRAIQVE DSTGERQPTMDLRRPRVWDSDVVIKINVQDSNDNSSQSSMEQSSHIDSNEPGASKRRDLNVDDKRDACSSGSASRDEPSAESLEGNLRCFQSMSVSNKMS PNTDNYEANQISNADGYHHQKENAHSSEGIAEKMETVDEEEEEIDRKECKSDQFLSEPELSLSDYSYFSPSLSYSDSDSEASRDNICHTLKDSPGPLRKP SLGTKLQESVTSNHKSPKRNGVIRTSGIQNCSSHKRPVWEERKDHNRRLHRVPEWRILPNNDSYTSPTLRDRSSLDCSRQIENLHDFDYRNGEDFSYSQQ KDSSCGYNGKRCRDDHAQAVYKKQCHRKYNHSFKDEMIPQNRRDWNEKEFFHERSCRIDDQDTCKDLYGSGRGLFPEDVIPPTYWRTRHLVSKFNNHKER EILWKRKSGNIQFQKSTHSMRLLGHENEDDLMQENCGRSIPLANQKRFSLNEKCERRNFIGREGNPSSRRVKYGCDPRMDLNSSWNMETEEDYCDPLHQH FFSKYQRETYESNDGRWQEKLPSRSVMFNSRLTERYRRPKRRICIREGQDRGWDGSFNDTFDAEDGIIYPDDQVHLERRKYSRRSRVLKWKQDESILRHH VGDFYVERKPCFYGVTSTHEKIHAKHRSATGGVVVNGMDFSRHSYKMIREGSNARCVNRNPGRMYRRGHEKMVRRCCDPVDLNVGEVKKSMFKRMDLKFA KEPMCSKDFNESQTGIQTDVLETGGDDKEKWIGKSQVTEHNEKLNIEDGQIMAEESSMESKLAKKCAFKSVVPTCNAKNRNFLCENASSRNKNDGAVDSK RILDTIAKMEKRRERFKDPIAQKKELDKTSEPQVEVIIDTVPANQDRPARKRRWGGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.010G145150 [exp]	0	1
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Potri.015G003000 [exp]	2.64	0.8835
AT2G40360			Transducin/WD40 repeat-like su...		Potri.004G222500 [exp]	4.00	0.8609
AT1G45332			Translation elongation factor ...		Potri.001G123600 [exp]	4.69	0.8815
AT4G16630			DEA(D/H)-box RNA helicase fami...		Potri.005G241300 [exp]	6.32	0.8704
AT1G71420			Tetratricopeptide repeat (TPR)...		Potri.013G098800 [exp]	6.48	0.8748
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Potri.006G055300 [exp]	10.67	0.8692
AT2G31340		EMB1381	embryo defective 1381 (.1)		Potri.002G224300 [exp]	11.40	0.8418
AT1G63250			DEA(D/H)-box RNA helicase fami...		Potri.003G124100 [exp]	11.74	0.8235
AT3G52140			tetratricopeptide repeat (TPR)...		Potri.009G065300 [exp]	11.83	0.8274
AT3G23330			Tetratricopeptide repeat (TPR)...		Potri.001G186500 [exp]	13.41	0.8593

Compare expression of checked genes

Potri.010G145150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.