Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18390 83 / 2e-17 Protein kinase superfamily protein (.1.2) AT5G38260 74 / 2e-14 Protein kinase superfamily protein (.1) AT1G66880 74 / 3e-14 Protein kinase superfamily protein (.1) AT1G66940 60 / 3e-10 protein kinase-related (.1.2.3) AT1G66920 60 / 6e-10 Protein kinase superfamily protein (.1.2) AT1G67000 60 / 9e-10 Protein kinase superfamily protein (.1) AT1G66930 56 / 1e-08 Protein kinase superfamily protein (.1) AT5G38210 54 / 5e-08 Protein kinase family protein (.1) AT1G66910 50 / 1e-06 Protein kinase superfamily protein (.1) AT5G36001 47 / 4e-06 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G045101 [exp] 127 / 1e-32 AT1G18390 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.015G045200 [exp] 115 / 2e-28 AT5G38260 403 / 1e-132 Protein kinase superfamily protein (.1) Potri.004G096675 [exp] 96 / 2e-23 AT5G38260 99 / 1e-23 Protein kinase superfamily protein (.1) Potri.004G096900 [exp] 99 / 9e-23 AT5G38210 557 / 0.0 Protein kinase family protein (.1) Potri.017G118250 [exp] 88 / 2e-19 AT5G38210 542 / 0.0 Protein kinase family protein (.1) Potri.017G118100 [exp] 86 / 2e-18 AT5G38210 575 / 0.0 Protein kinase family protein (.1) Potri.017G117120 [exp] 84 / 1e-17 AT5G38260 430 / 2e-142 Protein kinase superfamily protein (.1) Potri.010G120950 [exp] 81 / 5e-17 AT5G38260 371 / 3e-120 Protein kinase superfamily protein (.1) Potri.010G120800 [exp] 81 / 7e-17 AT1G18390 525 / 2e-178 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009151 [exp] 94 / 1e-21 AT1G66880 129 / 2e-32 Protein kinase superfamily protein (.1) Lus10039725 [exp] 86 / 3e-18 AT4G03230 445 / 5e-144 S-locus lectin protein kinase family protein (.1) Lus10016737 [exp] 80 / 2e-16 AT1G18390 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10022432 [exp] 78 / 1e-15 AT1G18390 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10028494 [exp] 76 / 4e-15 AT1G66880 480 / 2e-152 Protein kinase superfamily protein (.1) Lus10029132 [exp] 56 / 2e-08 AT1G18390 537 / 0.0 Protein kinase superfamily protein (.1.2) Lus10014923 [exp] 51 / 6e-07 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1) Lus10003401 [exp] 47 / 6e-06 AT5G53110 187 / 5e-57 RING/U-box superfamily protein (.1) Lus10004756 [exp] 47 / 7e-06 AT5G53110 80 / 4e-17 RING/U-box superfamily protein (.1) Lus10007845 [exp] 46 / 2e-05 AT5G53110 79 / 9e-17 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14380 [poplar] [flax] WAK_assoc Wall-associated receptor kinase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.010G145400.1 pacid=42797063 polypeptide=Potri.010G145400.1.p locus=Potri.010G145400 ID=Potri.010G145400.1.v4.1 annot-version=v4.1 ATGGCCTCTCTAGCTCGTCTTCCTTCTATTCTCTTCCTTGTCTTCCTCTACACCTCCATCAATGGTGACTCTAGTGATCAATCACCAATCACAGCATGCC CTTCCTTTGACTGCGGTGGTAATGGCATCACAATTAGCTACCCCTTTTGGCACCAAAGTCAACAGTTTGAGCACTGTGGATACCCAGGCTTCAATATCTC CTGCAGTGACCAAAATCCAATGATCTATCTCTCTAATGATCTTTATCCTATTACAAACATCAACCACTCCAGTAAATCTCTCACCCTTCACCATACCAAA ATAAGACGAGCAGATTGTCCAAAAGCACCCCATGATACTATCACAGTAAATAGCACTCCTTCACTGTTCAATTCTACGCTAGGCAATAAAATGCTGCATT TCTTTTATAATTGCACACTGTATCCACCTTCACTTCCACATATAGCATGTTTACAGTATGGTATTAAGCAGTCATATGTGTTCTTGGAGGGAGCAACACC AGAATTTGATTGGCATAGATATTGCGAGTCAGTTGTGAGTGCCCTGGTGAGTGACGAGGCAGTTTCTGGAGACTTGGTTCAGGGTTTTGGTCGGGCATTG CAAGGTGGTTTCAAGTTGACTTGGAAGCAACTAGATGGAGAATGTCAATCTTGTGAGGCTAGTGGTGGATTCTGTGGTTATAACAATGGTCTACACGAGA ATTTCTTTTGCATTTGTACCAACAGGAGGCATTCAACGAACTGTTATGACCAGGGTGCACTAACTACAGTCAGACCAGAACCTAATTACATATATGTTGC CATAGGTGCATTGATTTTTGGTGGTTCTGTTATTGCAGCAACTGTGTTTTACTTCACTCAGAAGAAGAAAGTTGGTTCATACAAACCAGTTTGA
AA sequence Show only first row Show all	>Potri.010G145400.1 pacid=42797063 polypeptide=Potri.010G145400.1.p locus=Potri.010G145400 ID=Potri.010G145400.1.v4.1 annot-version=v4.1 MASLARLPSILFLVFLYTSINGDSSDQSPITACPSFDCGGNGITISYPFWHQSQQFEHCGYPGFNISCSDQNPMIYLSNDLYPITNINHSSKSLTLHHTK IRRADCPKAPHDTITVNSTPSLFNSTLGNKMLHFFYNCTLYPPSLPHIACLQYGIKQSYVFLEGATPEFDWHRYCESVVSALVSDEAVSGDLVQGFGRAL QGGFKLTWKQLDGECQSCEASGGFCGYNNGLHENFFCICTNRRHSTNCYDQGALTTVRPEPNYIYVAIGALIFGGSVIAATVFYFTQKKKVGSYKPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18390			Protein kinase superfamily pro...		Potri.010G145400 [exp]	0	1
AT1G56130			Leucine-rich repeat transmembr...		Potri.007G067900 [exp]	3.31	0.9530
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.004G191400 [exp]	3.46	0.9678
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Potri.016G049200 [exp]	7.48	0.9592
AT1G68940			Armadillo/beta-catenin-like re...		Potri.010G136500 [exp]	7.48	0.9651
AT1G66120			AMP-dependent synthetase and l...		Potri.016G034800 [exp]	9.32	0.9627
AT2G38300	GARP		myb-like HTH transcriptional r...		Potri.001G280000 [exp]	10.48	0.9583
AT1G14160			Uncharacterised protein family...		Potri.008G088700 [exp]	11.53	0.9559
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Potri.007G009400 [exp]	16.43	0.9553
AT2G35930		PUB23	plant U-box 23 (.1)		Potri.002G174500 [exp]	16.43	0.9573
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.001G305400 [exp]	16.49	0.9558	1

Compare expression of checked genes

Potri.010G145400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.