Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G105401 [exp] 99 / 1e-24 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016908 [exp] 328 / 7e-112 ND / Lus10016909 [exp] 156 / 3e-46 ND / Lus10037769 [exp] 66 / 9e-14 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12617 [poplar] [flax] LdpA_C Iron-Sulfur binding protein C terminal
Representative CDS sequence Show only first row Show all	>Potri.010G145700.1 pacid=42797352 polypeptide=Potri.010G145700.1.p locus=Potri.010G145700 ID=Potri.010G145700.1.v4.1 annot-version=v4.1 ATGGCTTTGTGCTTCTCCATTAATGCCACAACATTACCTCAACATCATCATGGGAAAGTGAATTATAGGAGCAACAAAAAATGTCTTGAAAGTGTTAGAA ACCTTGTAAAAACAACCGGGGTTGCTTCAGTTGTATCTGCTCCTCAAGAATCACTGCAAAAGGGCAACTGGGTCAAGCTTATCTGCGGTGCTAGCTTTGA GGATGTTGTCGATGTCAGGAATCTTTCTCTAGTTTACACTCTAGCTGGAGTTGACTGCATTGATTGCGCTGCCGATGCATCTATTGTGAATGCTGTAAAC GAAGGAATTGAAGCAGCAAGGGAGATTGTTTACCTTCGAAAGCCTTGGGTAATGATTAGTGTTAATGATGATGAAGATCTTCACTTTCGTAAAGCTGAAT TTGATCCAGAGGAGTGTCCATTGGACTGTTCAAGGCCCTGTGAAACCATTTGTCCTGCAAGTGCAATATCATTACAGCAACATCAATCAACAACAGAACT TTCCCATGGTACCGAAACACTCAATGTATTAAAGGGCGGAGTGATAACTGAACGCTGTTATGGCTGTGGTCGTTGCTTTCCGGTTTGCCCATATGATAAA ATAAGAATGGCTATGTACACAAGGGATGCTGCCGCTACTGCTGAACTTCTTAAAAGGAATGATGTAGATGCCATAGAGATACATACAGGTGGAAGGCAGA CTGCCCCCTTTGAGGGACTCTGGAATGATTTGGGAAATTCAACTGGATACCTGAAACTAGTAGCAGTTAGCTTACCATATGCTGGAGATTCAACTATATC TTCAATGAACACAATCTACACAATGATGGAACCTCATCTTCCTTGCCTCAATTTATGGCAGTTGGATGGCCGTCCCATGAGTGGAGATATTGGCCGAGGT GCCACAAGGGAATCGATTGCATTCGCTGCTTGTTTGGCTGCTGTGAAAGATAAGCCTCGTGGTTTCTTTCAATTGGCCGGTGGCACAAATGCTCACACGG TTGAAGGGTTGAAAAAGGAAGGGCTTTTTCAAACAACACTAGTTGCTGAGAATTCAAAGGATAACAGATCAATGCCTACTTCACTTGCTTCATCACATGC TTTAATAGGTGGCATAGCTTACGGGGGCTATGCACGCAAGATTGTTGGAAGGGTCTTGAGTTCCATGCGATCACAGCATGGTCTTGTCCATATTGAGGAT TATCCAGAGCATCTCTTGCAAGCACTTGCAAATGCCCTTGATTTGGTTGGAACAGTCAAATGTTATGATCCCTGTACGTAG
AA sequence Show only first row Show all	>Potri.010G145700.1 pacid=42797352 polypeptide=Potri.010G145700.1.p locus=Potri.010G145700 ID=Potri.010G145700.1.v4.1 annot-version=v4.1 MALCFSINATTLPQHHHGKVNYRSNKKCLESVRNLVKTTGVASVVSAPQESLQKGNWVKLICGASFEDVVDVRNLSLVYTLAGVDCIDCAADASIVNAVN EGIEAAREIVYLRKPWVMISVNDDEDLHFRKAEFDPEECPLDCSRPCETICPASAISLQQHQSTTELSHGTETLNVLKGGVITERCYGCGRCFPVCPYDK IRMAMYTRDAAATAELLKRNDVDAIEIHTGGRQTAPFEGLWNDLGNSTGYLKLVAVSLPYAGDSTISSMNTIYTMMEPHLPCLNLWQLDGRPMSGDIGRG ATRESIAFAACLAAVKDKPRGFFQLAGGTNAHTVEGLKKEGLFQTTLVAENSKDNRSMPTSLASSHALIGGIAYGGYARKIVGRVLSSMRSQHGLVHIED YPEHLLQALANALDLVGTVKCYDPCT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.010G145700 [exp]	0	1
AT3G18680			Amino acid kinase family prote...		Potri.005G057700 [exp]	2.00	0.9715
AT3G19490		ATNHD1	ARABIDOPSIS THALIANA NA/H ANTI...		Potri.001G301000 [exp]	2.64	0.9779	NHD1.2
AT4G04330		AtRbcX1	homologue of cyanobacterial Rb...		Potri.011G010300 [exp]	5.47	0.9680
AT4G10000			Thioredoxin family protein (.1...		Potri.013G102000 [exp]	6.00	0.9645
AT2G42920			Pentatricopeptide repeat (PPR-...		Potri.005G202600 [exp]	6.70	0.9571
AT1G10657			Plant protein 1589 of unknown ...		Potri.008G189100 [exp]	8.12	0.9486
AT4G26370			antitermination NusB domain-co...		Potri.003G222900 [exp]	8.77	0.9553
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Potri.001G287400 [exp]	9.74	0.9644	MDHG.2
AT5G63630			P-loop containing nucleoside t...		Potri.014G097700 [exp]	9.79	0.9632
AT1G52220			unknown protein		Potri.003G052200 [exp]	11.95	0.9542

Compare expression of checked genes

Potri.010G145700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.