Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49460 614 / 0 ACLB-2 ATP citrate lyase subunit B 2 (.1) AT3G06650 607 / 0 ACLB-1 ATP-citrate lyase B-1 (.1) AT5G23250 76 / 4e-15 Succinyl-CoA ligase, alpha subunit (.1.2) AT5G08300 71 / 2e-13 Succinyl-CoA ligase, alpha subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G105300 [exp] 652 / 0 AT5G49460 1131 / 0.0 ATP citrate lyase subunit B 2 (.1) Potri.005G091400 [exp] 78 / 5e-16 AT5G23250 515 / 0.0 Succinyl-CoA ligase, alpha subunit (.1.2) Potri.015G028200 [exp] 57 / 8e-09 AT5G23250 507 / 0.0 Succinyl-CoA ligase, alpha subunit (.1.2) Potri.012G036200 [exp] 54 / 7e-08 AT5G23250 496 / 6e-178 Succinyl-CoA ligase, alpha subunit (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037770 [exp] 623 / 0 AT5G49460 1118 / 0.0 ATP citrate lyase subunit B 2 (.1) Lus10016910 [exp] 617 / 0 AT5G49460 1111 / 0.0 ATP citrate lyase subunit B 2 (.1) Lus10040992 [exp] 79 / 5e-16 AT5G08300 591 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10017389 [exp] 75 / 9e-15 AT5G08300 588 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10010187 [exp] 75 / 1e-14 AT5G08300 588 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10010185 [exp] 64 / 1e-11 AT5G08300 377 / 1e-132 Succinyl-CoA ligase, alpha subunit (.1) Lus10013440 [exp] 55 / 3e-08 AT5G08300 422 / 3e-148 Succinyl-CoA ligase, alpha subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0506 [poplar] [flax] Succ_CoA_synth PF00549 [poplar] [flax] Ligase_CoA CoA-ligase
Representative CDS sequence Show only first row Show all	>Potri.010G145766.1 pacid=42799838 polypeptide=Potri.010G145766.1.p locus=Potri.010G145766 ID=Potri.010G145766.1.v4.1 annot-version=v4.1 ATGGCGACAGGACAACTCTTCTCTCGAACAACACAAGCTTTGTTTTACAATTATAAGCAGCTGCCTATTCAACGCATGCTTGATTTTGATTTTCTATGTG GGAGGGAATTACCTTCTGTAGCTGGAATTATTAACCCTGGCGCTGAGGGGTTTCAGAAACTCTTTTTCGGTCAAGAGGAAATTGCAATCCCTGTGCATTC GACTGTTGAGGCAGCTTGCACTGCTCACCCAACTGCTGATGTGTTTATCAACTTCGCATCATTCAGAAGTGCGGCTGCTTCATCCATGGCTGCTCTGAAG CAGCCAACTGTTCGAGTTGTGGCTATCATAGCTGAGGGTGTTCCTGAGGCAGACACCAAGCAATTGATTGCATATGCTCGGGCTAACAATAAGGTTGTCA TTGGTCCGGCCACTGTTGGAGGCATTCAAGCTGGAGCATTCAAGATAGGTGAAACTGCTGGAACAATTGATAACATAATTGCTTGCAAGCTTTACCGGTC TGGATCTGTTGGATTTGTCTCCAAATCCGGTGGCATGTCTAATGAGCTGTATAACGCCATTGCCCGTGTAACTGATGGAATTTATGAAGGTATTGCAATT GGAGGAGATGTGTTCCCAGGATCTACTCTTTCTGATCATGTTCTGCGGTTCAACAACATCCCACAGGTTAAAATAATGGTTGTACTTGGGGAACTTGGTG GACGAGATGAGTATTCTCTAGTTGAAGCCTTAAAACAGGGAAAGGTAAACAAACCAGTGGTTGCTTGGGTTAGCGGAACTTGTGCACGACTCTTTAAATC AGAAGTACAATTTGGTCATGCTGGTGCTAAAAGTGGTGGTGAGATGGAATCCGCTCAAGCAAAAAATCAAGCAATAAAAGATGCCGGAGCTGTTGTTCCC ACTTCATATGAAGCTTTTGAGACTGCAATTAAGGAAACATTTGAGAAACTGGTTGACGAAGGAAAGATTACACCTGTAAAGGAGTTTACGCCTCCACAAA TCCCTGAAGATCTTAACATTGCAATCAAGAGCGGAAAAGTCCGGGCACCAACCCATATTATTTCTACCATCTCTGATGAAAGAGGGACGTTCAACCAATA CTTCCTGAGTTACTATTAA
AA sequence Show only first row Show all	>Potri.010G145766.1 pacid=42799838 polypeptide=Potri.010G145766.1.p locus=Potri.010G145766 ID=Potri.010G145766.1.v4.1 annot-version=v4.1 MATGQLFSRTTQALFYNYKQLPIQRMLDFDFLCGRELPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACTAHPTADVFINFASFRSAAASSMAALK QPTVRVVAIIAEGVPEADTKQLIAYARANNKVVIGPATVGGIQAGAFKIGETAGTIDNIIACKLYRSGSVGFVSKSGGMSNELYNAIARVTDGIYEGIAI GGDVFPGSTLSDHVLRFNNIPQVKIMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQAIKDAGAVVP TSYEAFETAIKETFEKLVDEGKITPVKEFTPPQIPEDLNIAIKSGKVRAPTHIISTISDERGTFNQYFLSYY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Potri.010G145766 [exp]	0	1
					Potri.015G072732 [exp]	1.41	0.9206
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Potri.008G008551 [exp]	1.73	0.9059
AT4G02160			unknown protein		Potri.002G199100 [exp]	4.00	0.8844
					Potri.001G357150 [exp]	5.29	0.7822
					Potri.002G022002 [exp]	6.92	0.7932
AT5G65840			Thioredoxin superfamily protei...		Potri.007G007201 [exp]	7.34	0.8911
AT1G67670			unknown protein		Potri.010G054700 [exp]	7.74	0.8535
					Potri.001G420750 [exp]	8.12	0.8512
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Potri.014G040700 [exp]	8.66	0.8346
AT3G27120			P-loop containing nucleoside t...		Potri.001G331300 [exp]	9.94	0.8573

Compare expression of checked genes

Potri.010G145766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.