Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49460 459 / 3e-161 ACLB-2 ATP citrate lyase subunit B 2 (.1) AT3G06650 459 / 6e-161 ACLB-1 ATP-citrate lyase B-1 (.1) AT3G58740 40 / 0.0007 CSY1 citrate synthase 1 (.1) AT2G42790 40 / 0.001 CSY3 citrate synthase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G105300 [exp] 474 / 3e-167 AT5G49460 1131 / 0.0 ATP citrate lyase subunit B 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016910 [exp] 476 / 1e-167 AT5G49460 1111 / 0.0 ATP citrate lyase subunit B 2 (.1) Lus10037770 [exp] 476 / 2e-167 AT5G49460 1118 / 0.0 ATP citrate lyase subunit B 2 (.1) Lus10010945 [exp] 42 / 0.0003 AT2G42790 855 / 0.0 citrate synthase 3 (.1) Lus10031384 [exp] 42 / 0.0003 AT3G58750 796 / 0.0 citrate synthase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00285 [poplar] [flax] Citrate_synt Citrate synthase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G145832.1 pacid=42798660 polypeptide=Potri.010G145832.1.p locus=Potri.010G145832 ID=Potri.010G145832.1.v4.1 annot-version=v4.1 ATGTCTTCCATTGTTGAACAGGGTTATGGTGTGGGTGATGTCATCTCTCTTTTATGGTTCAAGCGCAGCCTTCCACGTTACTGTACCCATTTTATGGAGA TATGCATCATGTTGTGTGCTGACCATGGTCCCTGTGTCTCTGGTGCTCACAACACTATAGTAACAGCAAGGGCAGGAAAGGACCTAGTTTCCAGCCTTGT CTCAGGCTTGCTCACAATTGGTCCCCGGTTTGGAGGCGCCATTGATGATGCTTCTCGGTACTTCAAGGATGCTTATGACAAGGGTCTAACACCCTACGAG TTTGTTGAAGGCATGAAAAAGAAGGGGATTCGTGTTCCAGGTATCGGGCACAGGATCAAGAGAGGGGACAACAGGGATAAAAGAGTAGAGCTTCTACAAC GGTTTGCTCGCACACATTTCCCTTCTGTTAAGTATATGGAGTATGCTGTTCTAGTCGAAACCTACACTCTTTCAAAGGCCAATAACTTGGTCCTTAACAT CGATGGCGCGATAGGGTCCCTTTTCTTGGATCTCCTTGCAGGTAGCAGAATGTTCACTAAACCAGAGATTGATGAGATTGTTGGGATTGGCTATTTGAAT GGGCTCTTTGTGTTGGCACGTTCCATTGGTTTGATTGGGCACACCTTCGACCAGAAGAGATTGAAACAACCTCTATACCGTCACCCATGGGAGGATGTTC TCTACACCAAGTGA
AA sequence Show only first row Show all	>Potri.010G145832.1 pacid=42798660 polypeptide=Potri.010G145832.1.p locus=Potri.010G145832 ID=Potri.010G145832.1.v4.1 annot-version=v4.1 MSSIVEQGYGVGDVISLLWFKRSLPRYCTHFMEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDASRYFKDAYDKGLTPYE FVEGMKKKGIRVPGIGHRIKRGDNRDKRVELLQRFARTHFPSVKYMEYAVLVETYTLSKANNLVLNIDGAIGSLFLDLLAGSRMFTKPEIDEIVGIGYLN GLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Potri.010G145832 [exp]	0	1
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Potri.016G107300 [exp]	1.41	0.9792
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Potri.008G053100 [exp]	2.00	0.9597	UXS1.2
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Potri.010G071000 [exp]	3.00	0.9610
AT1G75280			NmrA-like negative transcripti...		Potri.005G228700 [exp]	3.31	0.9312	PCBER7
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Potri.001G078900 [exp]	3.87	0.9508	KOR1.2
AT2G44160		MTHFR2	methylenetetrahydrofolate redu...		Potri.007G147300 [exp]	7.00	0.9002	Pt-MTHFR1.2
AT4G13700		ATPAP23, PAP23	purple acid phosphatase 23 (.1...		Potri.003G176000 [exp]	8.48	0.9361
AT4G26550			Got1/Sft2-like vescicle transp...		Potri.001G467200 [exp]	8.60	0.9073
AT1G77690		LAX3	like AUX1 3 (.1)		Potri.002G087000 [exp]	9.79	0.9285	PtrAUX8
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Potri.017G136950 [exp]	12.24	0.9111

Compare expression of checked genes

Potri.010G145832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.