Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18790 1818 / 0 OOP1, HY3, PHYB OUT OF PHASE 1, phytochrome B (.1) AT4G16250 1752 / 0 PHYD phytochrome D (.1) AT4G18130 1296 / 0 PHYE phytochrome E (.1) AT1G09570 1194 / 0 FHY2, HY8, FRE1, PHYA ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) AT5G35840 1159 / 0 PHYC phytochrome C (.1) AT2G40940 56 / 2e-07 ERS1 ethylene response sensor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G105200 [exp] 2137 / 0 AT2G18790 1840 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Potri.013G000300 [exp] 1191 / 0 AT1G09570 1806 / 0.0 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) Potri.003G032300 [exp] 72 / 1e-12 AT1G66340 1228 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.001G204200 [exp] 71 / 4e-12 AT1G66340 1216 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.002G201500 [exp] 67 / 4e-11 AT2G40940 897 / 0.0 ethylene response sensor 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037771 [exp] 2000 / 0 AT2G18790 1848 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Lus10016911 [exp] 1983 / 0 AT2G18790 1836 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Lus10011967 [exp] 1374 / 0 AT4G18130 1444 / 0.0 phytochrome E (.1) Lus10007594 [exp] 1179 / 0 AT1G09570 1852 / 0.0 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) Lus10006389 [exp] 1169 / 0 AT5G35840 1426 / 0.0 phytochrome C (.1) Lus10012151 [exp] 1169 / 0 AT1G09570 1855 / 0.0 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) Lus10012342 [exp] 1102 / 0 AT5G35840 1363 / 0.0 phytochrome C (.1) Lus10004593 [exp] 463 / 7e-153 AT4G18130 462 / 2e-153 phytochrome E (.1) Lus10006388 [exp] 351 / 4e-110 AT5G35840 493 / 8e-165 phytochrome C (.1) Lus10004592 [exp] 301 / 2e-92 AT4G18130 321 / 1e-100 phytochrome E (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [poplar] [flax] GAF PF00360 [poplar] [flax] PHY Phytochrome region CL0025 [poplar] [flax] His_Kinase_A PF00512 [poplar] [flax] HisKA His Kinase A (phospho-acceptor) domain CL0183 [poplar] [flax] PAS_Fold PF00989 [poplar] [flax] PAS PAS fold CL0161 [poplar] [flax] GAF PF01590 [poplar] [flax] GAF GAF domain CL0025 [poplar] [flax] His_Kinase_A PF02518 [poplar] [flax] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0183 [poplar] [flax] PAS_Fold PF08446 [poplar] [flax] PAS_2 PAS fold
Representative CDS sequence Show only first row Show all	>Potri.010G145900.2 pacid=42798753 polypeptide=Potri.010G145900.2.p locus=Potri.010G145900 ID=Potri.010G145900.2.v4.1 annot-version=v4.1 ATGGCATCACAATCACAAAGGCAAAGCAATCAGCCGGTACATAATCAAGCTCAGTCTTCGGGTACCAGTAACATGAGGCAACACCATCACGCCACAGAAT CAGTAAGCAAAGCAATTGCACAATACACAGTCGATGCACAACTCCATGCAGTTTTTGAACAATCTGGTGGCACTGGTAGGTCATTTGATTACTCAAAGTC TGTTAGAACTACTAACCAGTCAGTACCTGAACAACAAATCACAGCGTATTTGTCAAAAATTCAAAGGGGTGGTCATATTCAGCCATTTGGGTGCATGATT GCTGCAGATGAACAGTCTTTTAGGGTCATTGCGTATAGCGAAAACGCCAAAGATATGCTTGGTTTAACTCCACAATCAGTCCCTTCTTTAGAGAAACAAG AAATTCTCTTTGTTGGGGCTGATGTAAGGATTCTTTTTAGGCCTTCCAGCGCTGTTTTGCTTGAAAAAGCATTTGGTGCAAGGGAAATAACATTGTTGAA TCCAATTTGGATTCATTCCAAGAATTCCGGGAAGCCCTTTTACGCAATTTTGCATAGGATTGATGTTGGTATTGTTATTGATTTAGAGCCTGCTAGGACT GAAGACCCTGCTTTATCTATAGCAGGGGCTGTTCAGTCTCAGAAGTTAGCAGTTCGTGCGATTTCACAATTACAATCACTTCCTGGTGGGGATATTAAGT TATTATGTGATACTGTTGTGGACAGTGTGAGAGAGCTTACCGGGTATGATAGAGTTATGGTTTATAAGTTTCATGAGGACGAGCATGGTGAGGTTGTCGC TGAGAATAAAAGGGTTGATTTGGAACCTTATATCGGTTTGCATTATCCTTCCACGGATATACCACAAGCTTCGAGGTTTTTGTTCAAGCAGAATAGGGTT AGGATGATTGTGGATTGTCATGCTATACCGGTCCGTGTTATTCAGGATGAGGCGCTTATGCAGCCTTTATGCTTGGTTGGTTCGACTCTTCGTGCTCCTC ACGGTTGTCATGCTCAGTATATGGAGAATATGGGGTCGATTGCTTCATTGGCCATGGCTGTTATTATTTATGGAAATGATGAAGAAGCTATCGGTGGGAG GAACTCGATGAGGCTTTGGGGTTTGGTTGTTTGCCATCACACTTCTGCTAGGTGTATTCCATTTCCGCTTCGTTATGCGTGTGAGTTCTTAATGCAGGCT TTCGGGCTTCAATTGAACATGGAATTGCAGTTGGCATCGCAGTTGTTGGAGAAACATGTCTTGAGGACTCAGACTCTCTTATGTGATATGCTTCTCCGCG ACTCTCCTACTGGCATTGTTACTCAAAGTCCAAGTATCATGGACCTTGTGAAGTGTGATGGGGCAGCTCTTTATTACCAGGGGCAGTATTACCCTTTAGG CGTGACCCCAACTGAAACCCAAATAAAAGATATTGTGGAGTGGTTGTTGACCCTTCATGGAGACCCAACTGGATTAAGCACTGACAGTTTGGCCGATGCT GGGTATCCTGGGGCAGCCTTTCTCGGCGATGCAGTTTGTGGGATGGCTGTTGCTTATATTGCTGAGAGAGATTTTCTTTTTTGGTTTCGGTCTCACACTG CAAAGGAGGTCAAATGGGGTGGTGCGAAGCATCACCCAGAGGACAAGGATGATGGGCAGAGGATGCATCCGCGTTCATCATTCAAGGCATTCTTAGAGGT GGTGAAGAGCCGGAGTTTACCGTGGGAGAATGCAGAAATGGATGCCATTCATTCTTTGCAGCTTATTTTGCGAGACTCATTTAGGGATGCTGAAGCAACC AATTCTAAGGCTGTTGTACATACCCAGCTCAAGGATATGGAATTGCAAGGTATGGATGAGCTCAGTTCGGTTGCAAGAGAAATGGTTAGACTAATAGAGA CTGCAACTGCTCCGATATTTGCTGTAGACGTTGATGGCCGCATAAACGGGTGGAATGCAAAGGTTGCTGAGTTGACTGGACTCTCAGTTGAGGAAGCCAT GGGGAAGTCTTTGGTTCACGATCTTGTTTATAAGGAATATGAAGAAATTGTTGACAAGCTTATTCATCGTGCAGTAAAAGGCGAAGAAGATAAGAACGTG GAGATAAAATTGAGGACCTTTTGCTCTGAACACCAAAAGAAGGCTGTTTTTGTGGTGGTAAATGCTTGTTCGAGCAAGGATTACATGGATAATATAGTTG GGGTTTGCTTTGTTGGTCAGGATATTACAGGTCAAAAAGTGGTAATGGACAAATACGTCCTTATACAAGGTGATTATAAGGCTATTGTACACAGTCCCAA TCCTTCGATCCCTCCGATTTTTGCTTCAGATGAGAACACATGTTGCTTGGAGTGGAACACTGCCATGGAAAAACTCACAGGATGGTCCAGGGGCGAAGTT GTTGGGAAGATGTTGGTTGGGGAGGTTTTTGGCAGTTGCTGTAGGCTCAAGGGTCCAGATGCACTGACAAAATTCATGATTGCCCTGCACAATGCAATTG GAGGGATAGATACAGACAAGTTACCCTTTTCATTCTTTGACCGGAATGAAAAAAATGTGCAAACTCTCTTGACAGCTAACAAGAGGGTTAATATGGAGGG AGATATTATTGGAGCCTTCTGCTTCTTGCAGATTGCAAGTCCTGAGTTGCAGCAAACTTTGAAAGTTCAGAAACAGCAGGAAAAAAAAAGCTTTGCAAGG ATGAAAGAGTTGGCTTACATTTGCCAGGAAATAAAAAATCCTTTAAGTGGTATACACTTTACCAACTCGCTTTTGGAGAACACAGACTTGACTGAAGATC AACAGCAGTTTCTCGAGACTAGTGCTGCATGTGAAAAACAGATATTGAAGATCATACGAGACATTGATCTTGAGAGCATTGAAAATGGTTCACTGGAGCT TGAGAAGGCTGAATTTTTACTTGGGAGTGTCATAAATGCTGTTGTTAGCCAAGCAATGCTATTGCTGAGGGAAAGAAATCTACAATTGCTTCGTGATATT CCAGAAGAAATAAAAACGCTGGCAGTTTATGGTGATCAGGCAAGAATTCAACAAGTATTGGCTGATTTCTTGTTGAATATGGTGCGTTATGCTCCATCTT CAGCAGGTTGGGTGGAGATTCATGTTTGTCCAACACTGAAGCAAATCTCTGATGGACACACTCTCGTGCATACAGAGTTCAAGATTGTTTGCCCTGGTGA AGGTCTTCCTCCTGAATTAGTTCAAGACATGTTCCATAGTAGTAGATGGGTTACTCAAGAGGGCCTAGGGCTCAGCATGTGCAGGAAGATCTTAAAGCTA ATGAATGGTGAAGTCCAATATATTAGAGAGTCAGAAAGATGCTATTTCTTAGTTGTCCTCGAAGTACCCATGCCTCAAAAAGTTGGAAAGGGTGCTGCAG ACTAG
AA sequence Show only first row Show all	>Potri.010G145900.2 pacid=42798753 polypeptide=Potri.010G145900.2.p locus=Potri.010G145900 ID=Potri.010G145900.2.v4.1 annot-version=v4.1 MASQSQRQSNQPVHNQAQSSGTSNMRQHHHATESVSKAIAQYTVDAQLHAVFEQSGGTGRSFDYSKSVRTTNQSVPEQQITAYLSKIQRGGHIQPFGCMI AADEQSFRVIAYSENAKDMLGLTPQSVPSLEKQEILFVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSGKPFYAILHRIDVGIVIDLEPART EDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQNRV RMIVDCHAIPVRVIQDEALMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIYGNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQA FGLQLNMELQLASQLLEKHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTETQIKDIVEWLLTLHGDPTGLSTDSLADA GYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEVKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDAEAT NSKAVVHTQLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNV EIKLRTFCSEHQKKAVFVVVNACSSKDYMDNIVGVCFVGQDITGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFASDENTCCLEWNTAMEKLTGWSRGEV VGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGIDTDKLPFSFFDRNEKNVQTLLTANKRVNMEGDIIGAFCFLQIASPELQQTLKVQKQQEKKSFAR MKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDIDLESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDI PEEIKTLAVYGDQARIQQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFKIVCPGEGLPPELVQDMFHSSRWVTQEGLGLSMCRKILKL MNGEVQYIRESERCYFLVVLEVPMPQKVGKGAAD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Potri.010G145900 [exp]	0	1
AT1G21830			unknown protein		Potri.005G177600 [exp]	2.23	0.8412
AT1G07570		APK1A	Protein kinase superfamily pro...		Potri.001G240400 [exp]	3.46	0.8410	Pt-APK1.2
AT4G34200		EDA9	embryo sac development arrest ...		Potri.002G122700 [exp]	7.41	0.7945
AT1G73360	HD	ATHDG11, HDG11,...	ENHANCED DROUGHT TOLERANCE 1, ...		Potri.015G034100 [exp]	10.53	0.8346
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Potri.011G081200 [exp]	12.68	0.8109
AT3G52750		FTSZ2-2	Tubulin/FtsZ family protein (....		Potri.006G083100 [exp]	12.68	0.7653
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125050 [exp]	15.71	0.7687
AT3G54440			glycoside hydrolase family 2 p...		Potri.001G027400 [exp]	16.70	0.8023
AT5G36930			Disease resistance protein (TI...		Potri.005G206400 [exp]	18.73	0.7530
AT1G80460		GLI1, NHO1	nonhost resistance to P. s. ph...		Potri.003G030900 [exp]	19.28	0.7858	Pt-NHO1.1

Compare expression of checked genes

Potri.010G145900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.