Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06620 953 / 0 PAS domain-containing protein tyrosine kinase family protein (.1) AT5G49470 949 / 0 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT1G67890 940 / 0 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT3G06640 832 / 0 PAS domain-containing protein tyrosine kinase family protein (.1) AT3G06630 801 / 0 protein kinase family protein (.1) AT5G11850 370 / 2e-115 Protein kinase superfamily protein (.1) AT4G23050 364 / 1e-114 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT1G08720 362 / 4e-112 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT1G73660 361 / 1e-110 protein tyrosine kinase family protein (.1) AT1G18160 359 / 4e-110 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G105100 [exp] 1332 / 0 AT5G49470 948 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) Potri.003G122700 [exp] 395 / 1e-126 AT4G23050 606 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Potri.013G034800 [exp] 372 / 2e-115 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.005G047600 [exp] 370 / 7e-115 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.018G053800 [exp] 362 / 1e-111 AT5G11850 517 / 2e-169 Protein kinase superfamily protein (.1) Potri.006G229400 [exp] 362 / 1e-111 AT5G11850 520 / 2e-170 Protein kinase superfamily protein (.1) Potri.015G040100 [exp] 355 / 2e-108 AT1G73660 593 / 0.0 protein tyrosine kinase family protein (.1) Potri.012G048400 [exp] 352 / 3e-107 AT1G73660 1065 / 0.0 protein tyrosine kinase family protein (.1) Potri.016G095750 [exp] 345 / 4e-106 AT5G03730 970 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037772 [exp] 1021 / 0 AT3G06620 919 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1) Lus10016912 [exp] 929 / 0 AT1G67890 848 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10040540 [exp] 922 / 0 AT3G06620 858 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1) Lus10017844 [exp] 384 / 5e-122 AT4G23050 520 / 4e-175 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10024502 [exp] 380 / 9e-121 AT4G23050 579 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10027247 [exp] 372 / 5e-115 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1) Lus10031341 [exp] 366 / 3e-114 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10000937 [exp] 363 / 4e-113 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10004124 [exp] 363 / 7e-113 AT1G08720 948 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10038955 [exp] 357 / 9e-110 AT1G18160 978 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0183 [poplar] [flax] PAS_Fold PF00989 [poplar] [flax] PAS PAS fold CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.010G146000.1 pacid=42798950 polypeptide=Potri.010G146000.1.p locus=Potri.010G146000 ID=Potri.010G146000.1.v4.1 annot-version=v4.1 ATGGAAAGCACAGCACCACAAGCAGAAGAGCTCCTAAAAAAAATCCAACAACTTGAAGCGGGACACCATCATCTTCAACAACAAATGTCAAAGCTCAAGC TTTCCTCTACTACTACCGATCCAAAACCAACCCAACAAAGGTCCCATTCTATATCTCCACAAAGGTCTGGTCCCAGGAATCGGGTTGCTGGTGGGCCAAC CGGGTCGAGTTTTGAGGCTGCTTGGAAGAAGGGTTCTGCTTCATTTAGACATTCATCGCCTTTACAGAGAGAAAGTAGAAGTTTGAATAGTAATAATGCT AGCGATGGTCACAGTAATGGTGGTGGAGAAGGAGGAGATGGTAATAGAGGAGGACCTTCTTCTGTGAAGTTTACTGATAAACAATATTTGAATATATTGC AGTCCGTGGGACAGTCTGTTCATATTTTTGATCATTCAGGTCGTATTATTTACTGGAACCGAACAGCCGAGAACCTTTATGGTTATTCAGCTGCAGAAGC TCTTGGTCAGGATGCTATTGAGCTGCTAATTGATTCTCGGGATTATGCAGTGGCAAATGGTATTGTTCAACGAGTTAGTATGGGGGAGAAATGGACAGGG AAGTTTCCGGTTAAGAATAAAATGGCGGAGAGGTTTACAGTTGTTGCTACTAATACTCCTTTATACGATGATGATGGTGCTTTGGTTGGGATTATTTGCG TGTCGAGTGATTCACGACCTTTTCAAGAAGTGGGGGTTGCATTGTTGGATTCGAGGAACTTGGAAGCAGAGTCAAGCAATAGTTCGCCCAGGAATATCGT CATGAGCAAACTTGGTCTTGATTCTCAACAGCCCTTGCAAGCAGCAGTAGCGTCAAAAATATCAAATTTGGCATCCAAGGTGAGCAACAAAGTCAAGTCC AAAATCCGGCCGGGAGAGAACAGCATGGATCGTGAAGGAGGGAGTGGGGACAGTCACTATTCTGACCATGGGTACTCAGATGCAGCTCTATCTGACCATC GGGAGGATGCAAATTCTAGTGGAGCTAGTACGCCAAGAGGAGATGTACATCCATCTCCTTTTGGTGTATTTTCCCATCTTGACGACAGGTCACCAGCACA ATCATGCAGAGAATCTGGTGATGAGAGCGAAGGAAAGCCTGCAATTCACAAGATCTTTACCTCAAAGGCAGAAGCATGGATTGGTAAGAAAGGGCTGTCA TGGCCCTGGAAAGGGAATGAAAAGGAAGGCTCAGAAGCAAGGACTACACGTTTTGGGTGGCCTTGGTTGCAAAATGATCAAGAGAGTGAAACATTTCATC AGAGAAGTCCCTCTTCCGGTGCAAAATCTGAAAGCCATGTCAGTGAAAGTAATCGGCCTGCCAATAATGAGGCCTCTGGGTCCTGGTCTTCTTCAATTAA TGTTAACAGCACAAGCAGTGCCAGTAGTTGTGGAAGTACCAGCAGTACTGTGAATAAGGTGGACCCGGACACTGATTGCTTGGATTATGAAATATTATGG GAAGACTTGACTATTGGAGAGCAAATTGGGCAAGGTTCTTGTGGAACTGTATATCATGCCCTGTGGTACGGATCAGATGTTGCTGTCAAAGTATTCTCCA AGCAAGAGTATTCAGATGATGTTATACTTGCATTTAAACAAGAGGTATCTCTCATGAAGAGACTCCGGCATCCGAATGTTTTGCTCTTCATGGGTGCTGT GACTTCACCTCAGCGTCTCTGCATTGTTACAGAGTTCCTCCCACGTGGAAGTTTGTTTCGCTTACTGCAGAGGAACACAACCAAACTAGATTGGAGACGG CGTGCTCATATGGCATTGGATATAGCTCGAGGTATGAACTATCTTCATCATTACAACCCGCCTATCATTCATCGTGATCTGAAGTCTTCAAATCTCTTAG TTGACAAGAACTGGACTGTAAAGGTTGGAGATTTTGGTTTATCACGTCTAAAGCATGAAACTTATTTGACAACAAAGACCGGGAAGGGAACGCCTCAATG GATGGCACCCGAAGTTCTCCGTAATGAACCCTCCGATGAAAAGTCTGATGTATACAGCTATGGAGTGATACTCTGGGAGCTTGCCACTGAGAAGATTCCT TGGGATAATCTCAACTCAATGCAGGTGATTGGAGCTGTAGGGTTCATGAACCAACAGCTCGAGATTCCAAAAGATGTGGATCCACAGTGGGCTTCTATAA TTGGAAGTTGCTGGCACAGTGATCCACAGTGCCGTCCAACTTTCCAGGAATTGCTGGAAAAGCTCAGAGATCTTCAGAGACAATATGCCATTCAATTCCA GGCAGCCCGTTCCGCAGCTGGAGATAACACACAGAAGGAACTGTAG
AA sequence Show only first row Show all	>Potri.010G146000.1 pacid=42798950 polypeptide=Potri.010G146000.1.p locus=Potri.010G146000 ID=Potri.010G146000.1.v4.1 annot-version=v4.1 MESTAPQAEELLKKIQQLEAGHHHLQQQMSKLKLSSTTTDPKPTQQRSHSISPQRSGPRNRVAGGPTGSSFEAAWKKGSASFRHSSPLQRESRSLNSNNA SDGHSNGGGEGGDGNRGGPSSVKFTDKQYLNILQSVGQSVHIFDHSGRIIYWNRTAENLYGYSAAEALGQDAIELLIDSRDYAVANGIVQRVSMGEKWTG KFPVKNKMAERFTVVATNTPLYDDDGALVGIICVSSDSRPFQEVGVALLDSRNLEAESSNSSPRNIVMSKLGLDSQQPLQAAVASKISNLASKVSNKVKS KIRPGENSMDREGGSGDSHYSDHGYSDAALSDHREDANSSGASTPRGDVHPSPFGVFSHLDDRSPAQSCRESGDESEGKPAIHKIFTSKAEAWIGKKGLS WPWKGNEKEGSEARTTRFGWPWLQNDQESETFHQRSPSSGAKSESHVSESNRPANNEASGSWSSSINVNSTSSASSCGSTSSTVNKVDPDTDCLDYEILW EDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILAFKQEVSLMKRLRHPNVLLFMGAVTSPQRLCIVTEFLPRGSLFRLLQRNTTKLDWRR RAHMALDIARGMNYLHHYNPPIIHRDLKSSNLLVDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDVYSYGVILWELATEKIP WDNLNSMQVIGAVGFMNQQLEIPKDVDPQWASIIGSCWHSDPQCRPTFQELLEKLRDLQRQYAIQFQAARSAAGDNTQKEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06620			PAS domain-containing protein ...		Potri.010G146000 [exp]	0	1
AT1G09060			Zinc finger, RING-type;Transcr...		Potri.013G019000 [exp]	3.46	0.8429
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.008G135500 [exp]	5.47	0.8172
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Potri.003G063700 [exp]	8.24	0.8154
AT5G17990		PAT1, TRP1	PHOSPHORIBOSYLANTHRANILATE TRA...		Potri.015G078801 [exp]	8.36	0.8087
AT2G41140		CRK1, ATCRK1, A...	CDPK-related kinase 1 (.1)		Potri.006G040500 [exp]	12.36	0.7982	CRK1.1
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Potri.001G199200 [exp]	18.49	0.8287	MYA1.1
AT5G11350			DNAse I-like superfamily prote...		Potri.018G032300 [exp]	19.49	0.7738
AT1G73970			unknown protein		Potri.008G016000 [exp]	21.07	0.8037
AT3G14470			NB-ARC domain-containing disea...		Potri.001G379700 [exp]	21.67	0.8113
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.009G166932 [exp]	26.15	0.8108

Compare expression of checked genes

Potri.010G146000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.