Plant FIBer expression Database

Potri.010G146200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs

No hit found
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G146200.9 pacid=42797698 polypeptide=Potri.010G146200.9.p locus=Potri.010G146200 ID=Potri.010G146200.9.v4.1 annot-version=v4.1
ATGGGGAGATTTTCAAGCAAATATGTTGGCGTTTTAGCTGTGGTGTTTGTGTTAGTGTTGGGGTTAGCAGAGTGTAGAAAAATAGAAAAAGATGGCTTAG
GAGGTGGTGCTGGAGGAGGTGGAGGCTTTGGTGGTGGCGGTGGCCTCGGAGGAGGAAAAGGTGGAGGAATAGGTGGCGGTGTTGGAGGAGGGGGTGGTGC
TGGTGGTGGCTTCGGAGGAGGCAAGGGTGGAGGTGGAGGTATTGGAGGTGGCAAAGGCGGGGGCATTGGGGGTGGTGTAGGTGGGGGTTCTGGTGGTGGC
CTCGGAGGAGGAAAAGGTGGCGGTGTTGGAGGAGGAGGTGGTGCTGGCGGTGGCTTCGGAGGAGGCAAGGGTGGCGGTGGAGGTATTGGAGGTGGCAAAG
GTGGAGGCATTGGGGGTGGTGCTGGTGGTGGCTTCGGAGGAGGCAAGGGTGGTGGTGGCAGCGTTGGAGGTGGCAAAGGTGGGGGTATTGGGGGTGGTGT
AGGTGGGGGCCTCGGAGGAGGAAAGGGTGGCGGTGTTGGAGGAGGAGGTGGTGCTGGCGGTGGCTTCAGTGGAGGCAAGGGTGGCGGTGGAGGTATTGGA
GGTGGAAAAGGTGGAGGCATTGGGGGTGGTGCTGGCGGTGGCTTCGGAGGAGGCAAGGGTGGTGGCGGCGGCGTTGGAGGTGGCAAAGGTGGGGGTATTG
GGGGTGGTGTAGGTGGGGGCTCTGGTGGTGGCTTCGGAGGTGGAGCCGGAGGAGGTGGTGGTGCCGGTGTCGGTGGGGGTGCAGGAGGTGGAGCTGGCGG
CGGCTTTGGAGGTGGCAAGGGTGGTGGAGGAGGCATTGGAGGTGGAGCCGGAGGTGGTGGTGGTGCAGGAGGAGGATTTGGTGGAGGAGCCGGAGGTGGC
GGTGGATTTGGAGGAGGCAAAGGTGGGGGAGGAGGTTTTAGTGGCGGGCATTAA
AA sequence
>Potri.010G146200.9 pacid=42797698 polypeptide=Potri.010G146200.9.p locus=Potri.010G146200 ID=Potri.010G146200.9.v4.1 annot-version=v4.1
MGRFSSKYVGVLAVVFVLVLGLAECRKIEKDGLGGGAGGGGGFGGGGGLGGGKGGGIGGGVGGGGGAGGGFGGGKGGGGGIGGGKGGGIGGGVGGGSGGG
LGGGKGGGVGGGGGAGGGFGGGKGGGGGIGGGKGGGIGGGAGGGFGGGKGGGGSVGGGKGGGIGGGVGGGLGGGKGGGVGGGGGAGGGFSGGKGGGGGIG
GGKGGGIGGGAGGGFGGGKGGGGGVGGGKGGGIGGGVGGGSGGGFGGGAGGGGGAGVGGGAGGGAGGGFGGGKGGGGGIGGGAGGGGGAGGGFGGGAGGG
GGFGGGKGGGGGFSGGH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G146200
[exp]
0 1
AT3G02110 SCPL25 serine carboxypeptidase-like 2... Potri.017G094100
[exp]
3.16 0.8287
Potri.001G225804
[exp]
6.00 0.8137
AT1G72970 HTH, EDA17 HOTHEAD, embryo sac developmen... Potri.001G200800
[exp]
14.00 0.8793 ACE.2
AT1G15520 ATABCG40, ABCG4... Arabidopsis thaliana ATP-bindi... Potri.001G175700
[exp]
15.16 0.7888 PtrPDR12
AT1G17830 Protein of unknown function (D... Potri.017G155200
[exp]
15.42 0.7764
AT5G04530 KCS19 3-ketoacyl-CoA synthase 19 (.1... Potri.010G212600
[exp]
25.61 0.8108
AT3G17070 Peroxidase family protein (.1) Potri.004G006350
[exp]
29.24 0.7909
AT4G14723 EPFL4, CLL2 epidermal patterning factor li... Potri.008G157300
[exp]
30.78 0.8081
AT1G69940 ATPPME1 Pectin lyase-like superfamily ... Potri.015G110700
[exp]
34.35 0.8087
AT2G44480 BGLU17 beta glucosidase 17 (.1.2) Potri.001G227400
[exp]
38.85 0.8017

Potri.010G146200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.