Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17090 554 / 0 Protein phosphatase 2C family protein (.1.2) AT3G51370 446 / 7e-157 Protein phosphatase 2C family protein (.1.2) AT5G66080 440 / 1e-154 Protein phosphatase 2C family protein (.1) AT4G38520 440 / 4e-154 Protein phosphatase 2C family protein (.1.2) AT3G55050 426 / 7e-149 Protein phosphatase 2C family protein (.1.2) AT3G12620 421 / 4e-147 Protein phosphatase 2C family protein (.1.2) AT5G02760 377 / 9e-130 Protein phosphatase 2C family protein (.1) AT5G06750 362 / 2e-123 Protein phosphatase 2C family protein (.1.2.3) AT4G33920 360 / 4e-123 Protein phosphatase 2C family protein (.1) AT3G16560 134 / 6e-35 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G104300 [exp] 697 / 0 AT3G17090 568 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.004G177100 [exp] 464 / 1e-163 AT4G38520 608 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.009G137400 [exp] 455 / 3e-160 AT4G38520 657 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G108500 [exp] 447 / 3e-157 AT3G51370 646 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.007G061100 [exp] 446 / 1e-156 AT3G51370 590 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G214700 [exp] 436 / 6e-153 AT3G12620 542 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G046900 [exp] 434 / 5e-152 AT3G12620 543 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G082800 [exp] 400 / 4e-139 AT3G12620 502 / 4e-179 Protein phosphatase 2C family protein (.1.2) Potri.006G192600 [exp] 387 / 1e-133 AT5G06750 572 / 0.0 Protein phosphatase 2C family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037779 [exp] 610 / 0 AT3G17090 562 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10017061 [exp] 466 / 3e-166 AT3G17090 426 / 1e-150 Protein phosphatase 2C family protein (.1.2) Lus10027825 [exp] 458 / 3e-161 AT4G38520 586 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10005054 [exp] 453 / 2e-159 AT4G38520 582 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10041861 [exp] 450 / 2e-158 AT3G51370 630 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10025076 [exp] 441 / 2e-154 AT4G38520 609 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10024008 [exp] 438 / 2e-153 AT4G38520 605 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10023470 [exp] 437 / 2e-153 AT3G12620 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10040346 [exp] 433 / 1e-151 AT3G12620 616 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10030302 [exp] 416 / 9e-145 AT3G12620 597 / 0.0 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.010G146700.1 pacid=42798309 polypeptide=Potri.010G146700.1.p locus=Potri.010G146700 ID=Potri.010G146700.1.v4.1 annot-version=v4.1 ATGCTTCAGGCATTGATGAATCTGCTTTCTTTATGTTTTAGGCCATTTGGGCAAGGTAGCAGTAGTAACAGTGGTACAAAGTTTCAGTCTTTTGTTGGTA TCAGCAAAGAAGGGAAAGATGGATTGCTTTGGTATAGAGATATTGGAAGATATGGGTCTGGTGAATTTTCAATGGCTGTTGTTCAAGCTAATCAAGTACT TGAAGACCAAAGCCAGATTGAGTCTGGACCTTTTGGAACTTTTGTCGGTGTTTATGATGGTCATGGTGGACCTGAAGCTGCACGTTTTGTCTGTGATCAC TTGTTCAGGCACTTTCAAGCAGAGACGCAGGGTGTTGTGACAAGTGAGACCATCCAAAGAGCTTTCTGCTTAACAGAGGAAGGGTTTACCAATTTCGTGT CCGAGTTATGGAGCACTCGTCCCCAAATGGCAACAGTTGGGTCATGCTGTCTAGTTGGAGTCATATGTCAACAGACCCTCTTCGTGGCAAACCTGGGTGA TTCCCGTGTTGTGCTGGGCAAGAAAGTCGGCAACACAGGAGGTATTGCTGCAATACAATTATCAACTGAACATAATGCTAACCTTGAGGCCATCAGGCAC GAACTCGAGGACTTACATCCAAATGATTCCCAGATTGCTGTCCTTAAGCGTGGAGTTTGGAAAGTGAAGGGGATTATTCAGGTTTCTAGATCCATAGGAG ATGTATATATGAAACATGCACGATTCAACAGGGAACCAATTGATGCAAAGTTCAGACTTCCTGAACCAATGGACATGCCAATCTTGAGTGCCAATCCAAC TATCCTTTCACATCCTCTCCATCCGAATGATTCATTCCTTGTATTTGCATCTGATGGTCTTTGGGAACAATTGAGTAATGAAAAAGTTGTGGATATTGTC CACAGTAATCCACGAGCAGGAAGTGCCAAAAGGCTTGTCAAGGCTGCCCTACAAGAAGCAGCAAGAAAAAGAGAAACGAGATATTCAGATCTGCAGAAGA TTGACAAGAAGGTTCGGAGGCACTTTCATGACGATATAACTGTAATTGTTTTATTCTTAAACCACGATCTCATATCCAAAGGCGCAGTGCAAACCCCACC AGTTTCCATCCGAAGTGCTTTGGAGCACTGA
AA sequence Show only first row Show all	>Potri.010G146700.1 pacid=42798309 polypeptide=Potri.010G146700.1.p locus=Potri.010G146700 ID=Potri.010G146700.1.v4.1 annot-version=v4.1 MLQALMNLLSLCFRPFGQGSSSNSGTKFQSFVGISKEGKDGLLWYRDIGRYGSGEFSMAVVQANQVLEDQSQIESGPFGTFVGVYDGHGGPEAARFVCDH LFRHFQAETQGVVTSETIQRAFCLTEEGFTNFVSELWSTRPQMATVGSCCLVGVICQQTLFVANLGDSRVVLGKKVGNTGGIAAIQLSTEHNANLEAIRH ELEDLHPNDSQIAVLKRGVWKVKGIIQVSRSIGDVYMKHARFNREPIDAKFRLPEPMDMPILSANPTILSHPLHPNDSFLVFASDGLWEQLSNEKVVDIV HSNPRAGSAKRLVKAALQEAARKRETRYSDLQKIDKKVRRHFHDDITVIVLFLNHDLISKGAVQTPPVSIRSALEH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17090			Protein phosphatase 2C family ...		Potri.010G146700 [exp]	0	1
AT3G18850		LPAT5	lysophosphatidyl acyltransfera...		Potri.009G112307 [exp]	6.32	0.8913
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G120800 [exp]	9.48	0.8843	FLA14.5
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G121100 [exp]	12.24	0.8715
AT1G47480			alpha/beta-Hydrolases superfam...		Potri.004G143200 [exp]	12.32	0.8645
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Potri.012G109200 [exp]	15.65	0.8663
AT1G66070			Translation initiation factor ...		Potri.004G082200 [exp]	16.43	0.8562
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Potri.011G165100 [exp]	18.65	0.8467
					Potri.015G137350 [exp]	19.07	0.8209
AT3G46460		UBC13	ubiquitin-conjugating enzyme 1...		Potri.010G206832 [exp]	22.80	0.8046
AT5G15740		RRT1	O-fucosyltransferase family pr...		Potri.004G113500 [exp]	23.36	0.8277

Compare expression of checked genes

Potri.010G146700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.