Plant FIBer expression Database

Potri.010G146800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G16180 1235 / 0 unknown protein
AT3G28720 57 / 4e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G104100
[exp]
168 / 6e-49 AT4G16180 143 / 8e-41 unknown protein
Potri.017G078700
[exp]
57 / 5e-08 AT3G28720 823 / 0.0 unknown protein
Potri.004G123900
[exp]
56 / 1e-07 AT3G28720 852 / 0.0 unknown protein
Potri.018G150600
[exp]
44 / 0.0004 AT5G58100 1362 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017062
[exp]
1293 / 0 AT4G16180 1226 / 0.0 unknown protein
Lus10037780
[exp]
1267 / 0 AT4G16180 1215 / 0.0 unknown protein
Lus10015362
[exp]
54 / 5e-07 AT3G28720 628 / 0.0 unknown protein
Lus10033019
[exp]
51 / 1e-06 AT3G28720 450 / 2e-155 unknown protein
Lus10008552
[exp]
48 / 3e-05 AT5G58100 886 / 0.0 unknown protein
Lus10027581
[exp]
47 / 8e-05 AT5G58100 1451 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.010G146800.1 pacid=42798522 polypeptide=Potri.010G146800.1.p locus=Potri.010G146800 ID=Potri.010G146800.1.v4.1 annot-version=v4.1
ATGGCTATGGAATCCATCTCAAGCGGTTTATTATTATTATTATTAAACTTAACGTTGGGTTTCATCTTGCCTCACTCCGACTCAGCACCACAAGCCTTCC
GTCGTGACCCCGGCCACCCTCAGTGGCATCATAGCGCTTTTCAAGATGTCCGTGACAGCGTCCGATCCGACGTCAGCCGCATGCTCCACTCTCGCGCCGA
GGTTCCATTTCAGGTTCCGTTGGAGGTGAATGTAGTGCTCGTAGGTTTTAATGGTGATGGAGGGTATAGGTTTGGTGTAGATTCGCATAAATTAGAAGAG
TTTTTGAAGATCGGCTTCCAAACTCACAGGCCTTCATGTATGGAGACTGGCGAGCCTCTTGATATTGAACATCATGTCGTTTTTAACGTGTTTCCGGCTG
GGCAGCCGGAACTGATTGCGCTTGAGAAGGCATTGAAAGAGACTATGGTTCCTGCTGGGAATGCAAGAGAAACTGATTTTGGAAGGGAGGTGCCATTGTT
TGAGGTAGAAGCAGCGACCGTGGAACCAGTATTTCACAAACTATATTCCTACATATTTGATTTGGATAATTCAGAGTACTCTGCCAAAGATAATGACAGA
CCTGCTCCTAATGCGATCTTTCTTGTAAATTTTGATAAGGTGAGAATGGATCCTAGAAACAGGGAAATTGACCTAGACAATTTGATGTATGGAAACCTTA
AGGAGTTGTCTGATGAAGATTTGAGGAAACAAGAGGGAGATTACATTTATCGGTATCGGTATAACGGAGGAGGAGCAACTCAAGTTTGGCTGAGTTCGGA
CAGATTTGTCGTGATCGACCTGTCAGCAGGCCCTTGCACATATGGAAAGATTGAAACTGAAGAGGGAAGTGTCAGTTCCAGAACACTGCCGCGCATACGG
AACATGATGTTTCCAGGAGGTGTAGGTGCTGCTGGTGATCATTCTACTCGTGATACTTTTGTTGGACAACTTGCTGCTTTAATATCAACCACGGTAGAGC
ATGTTGTGGCTCCAGATGTTAGGTTTGAGACTGTTGATCTGACAACAAGATTGCTCATACCAATCATTGTTCTACATAATCATAACAGATATAATGTTAT
TGAGAACGGTCATAATTACAGCATCAATGTTGAAGAAATTGAATCAGAGGTGAAGAAGATGGTTCATGATGGACAAGAAGTTGTGATTGTTGGTGGTTCG
TATGCTTTACATAGTCATGAGAAGTTGGCTATCGCTGTATCAAAAGCAATGCGGGGTCATTCCTTGCAAGAAACTAAAAAGGATGGACGTTTCCATGTCC
ACACCAAGACATTTCTGGATGGAGCTGTACTTAAAGAAGAGATGGAACGGTCTGGCGATGTGCTTGCTGCAGGTTTAGTTGAGATTGCCGACCCAGCTCT
TTCAAGCAAATTTTTCCTTCGACAGAACTGGATGGACGAATCTAACGGTTCAAGTGATTCAATTCTTAAGCATAAACCTCTTTGGGCCAGTCAAACCTCT
AATAGTGTCAAGAAGAGGAGAAAGCAATTGCAAAAGAAACAAGGAGATCTGCAACGGACTTATGGGACAAGAGTTATTCCTGTCTTTGTGCTATCGCTGG
CTGATGTGGATCCAAATCTTATGATGGAGGACGAAAGCCTTGTTTGGACAAGCAAAGATGTTGTGATTGTTCTCCAGCATCTAAATGAAAAGATACCTCT
GAGTTATGTTTCGGAGATAGAGAGAAGGCATGCCTTTCCATCACTCGCACAGCGCCACATATTGGCAGGACTTGCTTCTACTGTGGGCGGGTTGAGCGCA
CCATATGAAAAGGCATCTCATGTGCATGAAAGGCCAATTGTAAATTGGCTCTGGGCGACTGGTTGCCACCCATTTGGACCATTCTCTAATACTTCTAAAG
TCAGTAAAATGCTACAGGATGTAGCCTTGAGGAACACAATTTATGCTCGTGTGGATTCTGCACTGCATAGAATTCGTGAAATGTCAGAGGATGTCCAAAC
TTTTGCTGCGGAGTATCTAAAAACCCCTCTTGGTGAACCTGTCAAAGGCAAGAAGAACAAGACAACAACGGAATTGTGGTTGGAGAAGTTCTACAAAAAG
ACAACGAACTTGCCAGAACCTTTTCCACATGAATTAGTTGAACGGTTGGAGAAGTACCTAGACAGCCTTGAGGAACAGCTTGTAGATCTGTCTTCTTTGT
TATATGATCACCGGTTACAAGAAGCACATTTGAACAGTTCCGAAATTCTTCAAAGTGCTCTTTTCACCCATCAGTATGTTGAATATGTTTTGATCTCTGA
GAGAGAGAAAATGAGATGCTGTGACATTGAATACAAATATCCTGTGCATTCTTCACAGACTTATATCTATGGAGGGATTCTTCTTGCTGGGTTCTTTGTG
TATTTTGTCGTCATTTTCTTTTCTAATCCTGTCCGTTGA
AA sequence
>Potri.010G146800.1 pacid=42798522 polypeptide=Potri.010G146800.1.p locus=Potri.010G146800 ID=Potri.010G146800.1.v4.1 annot-version=v4.1
MAMESISSGLLLLLLNLTLGFILPHSDSAPQAFRRDPGHPQWHHSAFQDVRDSVRSDVSRMLHSRAEVPFQVPLEVNVVLVGFNGDGGYRFGVDSHKLEE
FLKIGFQTHRPSCMETGEPLDIEHHVVFNVFPAGQPELIALEKALKETMVPAGNARETDFGREVPLFEVEAATVEPVFHKLYSYIFDLDNSEYSAKDNDR
PAPNAIFLVNFDKVRMDPRNREIDLDNLMYGNLKELSDEDLRKQEGDYIYRYRYNGGGATQVWLSSDRFVVIDLSAGPCTYGKIETEEGSVSSRTLPRIR
NMMFPGGVGAAGDHSTRDTFVGQLAALISTTVEHVVAPDVRFETVDLTTRLLIPIIVLHNHNRYNVIENGHNYSINVEEIESEVKKMVHDGQEVVIVGGS
YALHSHEKLAIAVSKAMRGHSLQETKKDGRFHVHTKTFLDGAVLKEEMERSGDVLAAGLVEIADPALSSKFFLRQNWMDESNGSSDSILKHKPLWASQTS
NSVKKRRKQLQKKQGDLQRTYGTRVIPVFVLSLADVDPNLMMEDESLVWTSKDVVIVLQHLNEKIPLSYVSEIERRHAFPSLAQRHILAGLASTVGGLSA
PYEKASHVHERPIVNWLWATGCHPFGPFSNTSKVSKMLQDVALRNTIYARVDSALHRIREMSEDVQTFAAEYLKTPLGEPVKGKKNKTTTELWLEKFYKK
TTNLPEPFPHELVERLEKYLDSLEEQLVDLSSLLYDHRLQEAHLNSSEILQSALFTHQYVEYVLISEREKMRCCDIEYKYPVHSSQTYIYGGILLAGFFV
YFVVIFFSNPVR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G16180 unknown protein Potri.010G146800
[exp]
0 1
AT2G44680 CKB4 casein kinase II beta subunit... Potri.002G139900
[exp]
8.06 0.6859 CKB3.2
AT3G62360 Carbohydrate-binding-like fold... Potri.002G194000
[exp]
11.83 0.8115
AT5G07900 Mitochondrial transcription te... Potri.001G035300
[exp]
12.00 0.7475
AT5G45610 SUV2 SENSITIVE TO UV 2, protein dim... Potri.003G098700
[exp]
12.24 0.7697
AT4G00090 Transducin/WD40 repeat-like su... Potri.014G069400
[exp]
12.48 0.7567
AT1G55520 ATTBP2, TBP2 A. THALIANA TATA BINDING PROTE... Potri.019G033300
[exp]
12.96 0.7391 TBP1.2,GTF902
AT4G38120 ARM repeat superfamily protein... Potri.001G454200
[exp]
22.27 0.7639
AT4G38270 GAUT3 galacturonosyltransferase 3 (.... Potri.004G206000
[exp]
25.00 0.7715
AT3G51050 FG-GAP repeat-containing prote... Potri.005G118300
[exp]
27.11 0.7541
AT3G09090 DEX1 DEFECTIVE IN EXINE FORMATION 1... Potri.006G096100
[exp]
29.79 0.7858 DEX1.1

Potri.010G146800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.