Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17100 174 / 1e-54 bHLH bHLH147, AIF3 sequence-specific DNA binding transcription factors (.1.2) AT3G06590 158 / 2e-48 bHLH bHLH148, AIF2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G09250 113 / 4e-31 bHLH bHLH149, AIF4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G05800 97 / 1e-24 bHLH bHLH150, AIF1 AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G103500 [exp] 267 / 7e-91 AT3G17100 174 / 2e-54 sequence-specific DNA binding transcription factors (.1.2) Potri.005G012400 [exp] 121 / 3e-34 AT1G09250 109 / 1e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G007700 [exp] 114 / 2e-31 AT1G09250 95 / 4e-24 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G201500 [exp] 42 / 8e-05 AT3G58850 82 / 4e-21 phy rapidly regulated 2 (.1) Potri.006G177000 [exp] 40 / 0.0005 AT4G30410 142 / 2e-43 sequence-specific DNA binding transcription factors (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017065 [exp] 188 / 7e-60 AT3G06590 171 / 1e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10037783 [exp] 188 / 9e-60 AT3G06590 172 / 9e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10031425 [exp] 49 / 8e-08 AT1G09250 51 / 7e-09 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010907 [exp] 45 / 1e-05 AT3G06590 81 / 8e-19 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G147400.1 pacid=42797265 polypeptide=Potri.010G147400.1.p locus=Potri.010G147400 ID=Potri.010G147400.1.v4.1 annot-version=v4.1 ATGGAACCATCGTCGTCGTCAGCAGTAGCAGCAGCAATAGTGAGTACTAACGCCAACATCAACACGGATCGAACAAGAAGGAAAAAGAAGAAGAAATCAG TGTTGCAGCAACACCAATCAAAACAGAACCAAAACTCACAGAGCCACGCCAAATGGAAAACAGAAGCACAACAACAAGTCTACTCATCCAAACTCATCCA AGCCTTAAGCCAAGTCAATCTCAACCCTTCAACTTCATCAGCCCCGCGTCAAGGTCGAGCCGTTAGAGAAGTTGCTGATCGGGCTTTAGCTTTCGCTGCT AAAGGTAAAACCAGGTGGAGCCGAGCCATTTTAACTAGCCGCATCAAACTCAAATTTCGGAAACAACAACATAAGAGACAGAGACTTGCGTCGTCGTCTT CTTCTTCTCCAGGATCCACTACCGGGAGTAGCAGCCGGTCGTCGAGGAAGCATAAAGTGAGTGTTTTGAGGTTGAAAGCGAAGGGTTTGCCGGCTGTTCA AAGGAAAGTTCGTGTTCTTGGCCGGTTAGTTCCTGGTTGCCTGAAACAACCATTGCCTGTTATTTTGGAAGAAGCTACAGATTATATTGCTGCTTTGGAG ATGCAAGTTAAAACCATGACTGCTATAGCTGAGCTTCTTTCTCGCTCTACCTCCGAAGCCAGCTCTACTTCTGAGCCGATGACCTCCTAA
AA sequence Show only first row Show all	>Potri.010G147400.1 pacid=42797265 polypeptide=Potri.010G147400.1.p locus=Potri.010G147400 ID=Potri.010G147400.1.v4.1 annot-version=v4.1 MEPSSSSAVAAAIVSTNANINTDRTRRKKKKKSVLQQHQSKQNQNSQSHAKWKTEAQQQVYSSKLIQALSQVNLNPSTSSAPRQGRAVREVADRALAFAA KGKTRWSRAILTSRIKLKFRKQQHKRQRLASSSSSSPGSTTGSSSRSSRKHKVSVLRLKAKGLPAVQRKVRVLGRLVPGCLKQPLPVILEEATDYIAALE MQVKTMTAIAELLSRSTSEASSTSEPMTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17100	bHLH	bHLH147, AIF3	sequence-specific DNA binding ...		Potri.010G147400 [exp]	0	1
AT2G39050		ArathEULS3	Euonymus lectin S3, hydroxypro...		Potri.019G031500 [exp]	2.00	0.8095
AT3G24515		UBC37	ubiquitin-conjugating enzyme 3...		Potri.006G157600 [exp]	6.48	0.7774
AT3G14067			Subtilase family protein (.1)		Potri.003G067000 [exp]	6.70	0.7215
AT5G61340			unknown protein		Potri.015G060900 [exp]	11.57	0.8156
AT1G11480			eukaryotic translation initiat...		Potri.007G119200 [exp]	19.67	0.7244
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Potri.010G255600 [exp]	19.79	0.7202
AT1G32770	NAC	NST3, ANAC012, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.001G448400 [exp]	19.97	0.7985
AT3G28920	ZF_HD	ATHB34, ZHD9	ZINC FINGER HOMEODOMAIN 9, hom...		Potri.017G082900 [exp]	22.47	0.6875
AT1G19870		IQD32	IQ-domain 32 (.1)		Potri.002G025200 [exp]	26.60	0.7952
AT3G59690		IQD13	IQ-domain 13 (.1)		Potri.013G127200 [exp]	27.29	0.7919

Compare expression of checked genes

Potri.010G147400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.