Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16280 337 / 7e-107 FCA RNA binding;abscisic acid binding (.1.2.3.4) AT2G47310 185 / 1e-50 flowering time control protein-related / FCA gamma-related (.1) AT1G03457 165 / 4e-44 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G03110 157 / 2e-41 AtRBP-DR1 RNA-binding protein-defense related 1 (.1.2) AT4G00830 76 / 5e-14 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT2G18510 71 / 6e-13 EMB2444 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13224 67 / 1e-11 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G40490 66 / 3e-11 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G50250 65 / 3e-11 CP31B chloroplast RNA-binding protein 31B (.1) AT2G23350 64 / 3e-10 PABP4, PAB4 poly(A) binding protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G192900 [exp] 255 / 6e-76 AT2G47310 273 / 1e-85 flowering time control protein-related / FCA gamma-related (.1) Potri.014G135540 [exp] 166 / 3e-44 AT4G03110 513 / 0.0 RNA-binding protein-defense related 1 (.1.2) Potri.002G214000 [exp] 162 / 3e-43 AT4G03110 506 / 4e-179 RNA-binding protein-defense related 1 (.1.2) Potri.007G028300 [exp] 78 / 4e-15 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G051500 [exp] 76 / 5e-14 AT2G44710 627 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G139700 [exp] 73 / 5e-13 AT2G44710 585 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.016G090700 [exp] 68 / 3e-12 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G104500 [exp] 69 / 4e-12 AT4G00830 574 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.007G009800 [exp] 69 / 8e-12 AT5G09880 519 / 9e-180 Splicing factor, CC1-like (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037787 [exp] 340 / 4e-106 AT4G16280 391 / 5e-127 RNA binding;abscisic acid binding (.1.2.3.4) Lus10017070 [exp] 330 / 2e-102 AT4G16280 376 / 2e-121 RNA binding;abscisic acid binding (.1.2.3.4) Lus10006304 [exp] 258 / 2e-78 AT4G16280 322 / 7e-106 RNA binding;abscisic acid binding (.1.2.3.4) Lus10005926 [exp] 148 / 9e-38 AT4G03110 548 / 0.0 RNA-binding protein-defense related 1 (.1.2) Lus10041728 [exp] 79 / 3e-15 AT2G18510 436 / 1e-153 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10040910 [exp] 78 / 5e-15 AT4G03110 326 / 5e-109 RNA-binding protein-defense related 1 (.1.2) Lus10028162 [exp] 72 / 1e-12 AT2G44710 675 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10012348 [exp] 68 / 1e-11 AT3G07810 436 / 5e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10006305 [exp] 64 / 1e-11 AT4G16280 68 / 1e-13 RNA binding;abscisic acid binding (.1.2.3.4) Lus10032124 [exp] 66 / 4e-11 AT5G40490 307 / 3e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0680 [poplar] [flax] WW PF00397 [poplar] [flax] WW WW domain
Representative CDS sequence Show only first row Show all	>Potri.010G147900.3 pacid=42798517 polypeptide=Potri.010G147900.3.p locus=Potri.010G147900 ID=Potri.010G147900.3.v4.1 annot-version=v4.1 ATGAACAGACACAGGGGAGGAGACCGCTACAGCGACAGCGACAACGACAACGACAACTACAACTACAACACAAGCAGCTATAACAACACCATCGACAACC AAGATTCCTCGTACCCTAACCGCCGCCCCTCCCGCTTCTCCGATGCCCCTTCCCGCTTCTCCGACAGTCCTATAAACCGCTACTCTGACAACGGCAACAG CAACAACTATACCAATTACAATCTCCGTAGCCCTAATAATTACCATGGCGGTGGAGGGGGAAGGCGCGCATTTGATAGTCCTCCGGGTGGTGGTGTAGGT GGAGATGGTGGATTCCGGCCCATGGGTGGTGGTGGTGATGGGGGGTTTAGGCCGATGGGCGGTGCAGGTGGGGGGTTTGTGCCTAATTATCAAGTGCCGC CTCCGTTGTCCCTGCCACCTCAGAATATTTCCGGGCGCAAACGAGGGTTTCACGGAAGCTCGCCTGATAGGTTTGATGGTGGTGGTGGTCGTAGTGGTTT TGCTTTTGCAAAGCTCTTTGTGGGTTCTGTTCCAAGGACAGCTACTGAAATGGATATTCGCCCCTTGTTTGAAGAACATGGAAATGTGATAGAGGTTGCA TTGATCAAAGACAAGAGAACAGGACAGCAACAAGGCTGTTGTTTTATAAAATATGCAACCTCAGAAGAAGCTGATAGGGCCATCAGAGCTTTGCACAATC AACGAACTCTGCCTGGGGGTGTGGGTCCCATCCAAGTTAGATATGCTGATGGAGAACGAGAGCGCCTTGGTGCAGTTGAGTACAAGTTGTTTGTTGGTTC ACTGAACAAACAGGCTACAGAAAAGGAAGTTGAGGAAATTTTTACACCATATGGTCGGGTTGAAGATGTTTACCTTATGCGTGATGAAATGAAGCAGAGT CGTGGTGTGCCCTTAACTCTTACTTCATGTTGTGGTTTTGTTAAATACTCCCATAGAGACATGGCATTGGCAGCTATTAATGGTCTTAACGGAATATATA CAATGAGAGGTTGTGAGCAACCATTAACTGTCCGGTTTGCAGATCCTAAGAGGCCCAGGCCTGGAGGAGACTCAAGAGGTGGTCCTGCATTTGGTAGTCC AGGTGCCGGCCCAAGATTTCAAGCTTCAGGGCTTAGACCGCCACCAAATTTAGGGGATCCTATGGGTGACCATATTCCGCCTAATGCTTGGCTTCCAATG AGTCCCCAGAATATGGGTCCTTCCTCCAATGCTGGTGTTCATGGTTTTGGGAATCAGTTGCCTCCTAGGTCTGGTGACTTAGCAATGCCTTTAAACCAGA CTGTTAACCAGTCACTGCAGCATCTCCCCCCTGCTAGCCAGCAAATATCACCTCTGCAGAAACCACTTCAATCGCCTCAGCACTTGCCACCTTCCCTTCA ACTACATGCTCAAGCTGCATCTTCCTATCCTCAGACACAGACTTCTCATGTCAGTCAGCTACAGAGTTCGCTTGCAACTGGTCAAACACCCTTCAGTCAA GCACTGCCATCACAGCATATGATTGGCTTTGGAAGACAGTTACCTGCTTCTCAAACTGAGATCCAGCAGGGCATCTCATCAACTGTAGCACTACAAGCCC CCCACTCCATGTCTGTAGCAATAAATCAACAGCAATTGCCTGCACCTGTTCAGCAGCAACTACTTCAGCCTCTCCAGCAGTCCCCTTCTCAGTTAGCTCA GATGCTGTCACAACAAACTCAAACCCTGCAAGCAAGCTTTCAGTCATCTCAGCAGGCTTTTTCCCAGCTGCAGCAACAGTTGCAGATGATGCAACCATCA AACCAGAGCACACTGCAACAGAGTCCCCAGGCTCCAAGACAGCAGTGGCCTCCACAAGCAGTTGCCAGCACTCCACTTCCTGTAGATTTGCCTCCATCTA CTTCTGCTCCTACTGCAGGTGTTATGAGTCAGACTGTAGCTCCTGTAAAATGTAATTGGACTGAGCATACATCCCCTGAGGGATTCAAGTACTATTATAA CGGTGTAACTCATGAAAGCCGATGGGAGAAGCCTGAAGAATTGAAATTATTTGAGCAGCAGCAGCAACTGCACCAAAAACCTCCAGTTCAACTGCCTCAA CCACAGACAAATCCTCAAGTTTTGCCCACCCAGCAAGTGCCACAAACCCAACAGGTGCATCTTCAAACACAGTTTCGCCACCAGCAACAGCAGCCACAGC CTTCCTTTTCTTCTACGGAACATGGTTATACACAATTACCTGCAGCAGCTAGTTCAGTCAACGATTCGACACGCTTCCAGGGGCGTCCAGTTGCTCAGGA TTGGATGTGGAGGAATAAGCCAGCAGGAACTTGA
AA sequence Show only first row Show all	>Potri.010G147900.3 pacid=42798517 polypeptide=Potri.010G147900.3.p locus=Potri.010G147900 ID=Potri.010G147900.3.v4.1 annot-version=v4.1 MNRHRGGDRYSDSDNDNDNYNYNTSSYNNTIDNQDSSYPNRRPSRFSDAPSRFSDSPINRYSDNGNSNNYTNYNLRSPNNYHGGGGGRRAFDSPPGGGVG GDGGFRPMGGGGDGGFRPMGGAGGGFVPNYQVPPPLSLPPQNISGRKRGFHGSSPDRFDGGGGRSGFAFAKLFVGSVPRTATEMDIRPLFEEHGNVIEVA LIKDKRTGQQQGCCFIKYATSEEADRAIRALHNQRTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFTPYGRVEDVYLMRDEMKQS RGVPLTLTSCCGFVKYSHRDMALAAINGLNGIYTMRGCEQPLTVRFADPKRPRPGGDSRGGPAFGSPGAGPRFQASGLRPPPNLGDPMGDHIPPNAWLPM SPQNMGPSSNAGVHGFGNQLPPRSGDLAMPLNQTVNQSLQHLPPASQQISPLQKPLQSPQHLPPSLQLHAQAASSYPQTQTSHVSQLQSSLATGQTPFSQ ALPSQHMIGFGRQLPASQTEIQQGISSTVALQAPHSMSVAINQQQLPAPVQQQLLQPLQQSPSQLAQMLSQQTQTLQASFQSSQQAFSQLQQQLQMMQPS NQSTLQQSPQAPRQQWPPQAVASTPLPVDLPPSTSAPTAGVMSQTVAPVKCNWTEHTSPEGFKYYYNGVTHESRWEKPEELKLFEQQQQLHQKPPVQLPQ PQTNPQVLPTQQVPQTQQVHLQTQFRHQQQQPQPSFSSTEHGYTQLPAAASSVNDSTRFQGRPVAQDWMWRNKPAGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16280		FCA	RNA binding;abscisic acid bind...		Potri.010G147900 [exp]	0	1
AT2G32630			Pentatricopeptide repeat (PPR-...		Potri.003G008900 [exp]	2.00	0.9353
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.011G024800 [exp]	2.00	0.9338
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Potri.006G280200 [exp]	2.44	0.9311
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Potri.015G147200 [exp]	3.46	0.9184
AT4G25880		APUM6	pumilio 6 (.1.2.3)		Potri.006G165100 [exp]	4.00	0.9281	Pt-PPD1.4
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Potri.013G018700 [exp]	5.00	0.9235
AT1G72390			unknown protein		Potri.001G165800 [exp]	5.19	0.9137
AT2G36480			ENTH/VHS family protein (.1.2....		Potri.006G115600 [exp]	6.32	0.9147
AT5G38840	FHA		SMAD/FHA domain-containing pro...		Potri.004G111500 [exp]	8.12	0.8960
AT1G01930	C2H2ZnF		zinc finger protein-related (....		Potri.002G149800 [exp]	8.71	0.8994

Compare expression of checked genes

Potri.010G147900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.