Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21800 554 / 0 QQT2 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G12790 91 / 2e-20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) AT5G22370 75 / 6e-15 QQT1, EMB1705 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G103000 [exp] 697 / 0 AT4G21800 527 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.014G174200 [exp] 87 / 3e-19 AT4G12790 432 / 5e-155 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Potri.014G015700 [exp] 86 / 8e-19 AT5G22370 462 / 6e-166 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019602 [exp] 559 / 0 AT4G21800 545 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10040022 [exp] 543 / 0 AT4G21800 542 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036411 [exp] 90 / 3e-19 AT4G12790 444 / 5e-156 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10041086 [exp] 84 / 4e-18 AT4G12790 435 / 9e-156 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10007747 [exp] 79 / 2e-16 AT5G22370 396 / 1e-140 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018675 [exp] 79 / 4e-16 AT5G22370 493 / 9e-178 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF03029 [poplar] [flax] ATP_bind_1 Conserved hypothetical ATP binding protein
Representative CDS sequence Show only first row Show all	>Potri.010G148000.1 pacid=42799371 polypeptide=Potri.010G148000.1.p locus=Potri.010G148000 ID=Potri.010G148000.1.v4.1 annot-version=v4.1 ATGGATATTGACTCTAAGCTCGATAAATTTGATGTTAAGTCTGGGGATGAGGGCTCATCATCAATGCAAGTGGATTCCAAGGGAACTGCTGAAGAAAAGG ATGAATTAACTGACTCAATGAATAAATTGAATGTGGAAGCATCGTCATCTGGGCAGGCGGGACATTCATTCAGAAGAAAACCAGTTATCATCATCGTTGT TGGAATGGCAGGGAGTGGAAAAACAACTTTTCTTCACAGGTTGGTTTGCCACACACAAGCTTCAAGGATTCGTGGTTATGTGCTCAACCTTGATCCTGCT GTGATGACTCTCCCCTATGGTGCAAATATTGATATAAGGGACACCGTTAAGTACAAGGAAGTGATGAAGCAGTTTAATCTTGGACCAAATGGCGGAATCC TGACATCTCTCAACTTGTTTGCAACAAAATTTGACGAGGTCATTCAAGTCATTGAGAACCGAGCAGATCAGCTTGATTATGTTCTTGTGGATACGCCTGG TCAAATTGAAATATTCACTTGGTCTGCTTCTGGAGCTATCATCACAGAAGCTTTTGCTTCAACCTTTCCAACTGTGGTTGCTTATGTAGTTGACACGCCT CGTTCCTCAAGTCCAGTAACTTTCATGAGCAATATGCTTTATGCTTGCAGCATACTCTACAAGACACGGTTGCCTCTTGTGTTAGCGTTCAACAAAACTG ATGTGGCTCAACACCAATTTGCTTTAGAGTGGATGGAAGATTTTGAAGCCTTTCAAGCAGCAATGAGGTCAGATGATTCATACATGTCTACTTTTTCTCA AAGCCTTTCCCTTGTGCTCGATGAATTCTACAAAAATTTGAGATCAGTTGGGGTCTCTGCTGTTTCTGGAGCTGGAATGGATGCCTTCTTTAAGGCTATC GAAGCCAGTGCTGAGGAGTATATGGAAACCTACAAGTCTGATCTTGATAAGAGACGGGCAGAGAAGCAACAAATGGAGGAAGAGCAGCGAAAACACAACA TGGAAAAGCTGAGGAGGGACATGGAACAATCAGGGGGACAGTCTGTTGTTTTGAGCACTGATTTGAAGGATAAAGGTCAGAATGATAACATGGTTGAGGA GGATGAGGACATTGAAGATGATGATTTTGAGACGTTTACTGACAAGGAAGATGTTATAGACGAGGATGAAGATGAAGAGGTGGGCAGTTTCTCCTTCTAG
AA sequence Show only first row Show all	>Potri.010G148000.1 pacid=42799371 polypeptide=Potri.010G148000.1.p locus=Potri.010G148000 ID=Potri.010G148000.1.v4.1 annot-version=v4.1 MDIDSKLDKFDVKSGDEGSSSMQVDSKGTAEEKDELTDSMNKLNVEASSSGQAGHSFRRKPVIIIVVGMAGSGKTTFLHRLVCHTQASRIRGYVLNLDPA VMTLPYGANIDIRDTVKYKEVMKQFNLGPNGGILTSLNLFATKFDEVIQVIENRADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVAYVVDTP RSSSPVTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHQFALEWMEDFEAFQAAMRSDDSYMSTFSQSLSLVLDEFYKNLRSVGVSAVSGAGMDAFFKAI EASAEEYMETYKSDLDKRRAEKQQMEEEQRKHNMEKLRRDMEQSGGQSVVLSTDLKDKGQNDNMVEEDEDIEDDDFETFTDKEDVIDEDEDEEVGSFSF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Potri.010G148000 [exp]	0	1
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Potri.012G085700 [exp]	2.23	0.8583
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Potri.001G465500 [exp]	4.69	0.8224	HEN902,HEN1.2
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Potri.003G044100 [exp]	4.89	0.8563	Pt-ATTIM23.1
AT1G52920		GPCR, GCR2	G-PROTEIN COUPLED RECEPTOR 2, ...		Potri.001G403200 [exp]	6.32	0.8409
AT3G06790			plastid developmental protein ...		Potri.010G007200 [exp]	7.74	0.8402
AT1G32260			unknown protein		Potri.003G095600 [exp]	8.12	0.8481
AT5G48030		GFA2	gametophytic factor 2 (.1)		Potri.001G271300 [exp]	8.48	0.8434	Pt-GFA2.2
AT5G24240			Phosphatidylinositol 3- and 4-...		Potri.015G013600 [exp]	11.40	0.8254
AT2G19540			Transducin family protein / WD...		Potri.005G074400 [exp]	12.00	0.8027
AT5G25520			SPOC domain / Transcription el...		Potri.018G034500 [exp]	12.72	0.8277

Compare expression of checked genes

Potri.010G148000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.