Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GAL1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06580 791 / 0 GAL1, GALK GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) AT4G16130 72 / 4e-13 ATISA1, ARA1 arabinose kinase (.1) AT3G42850 55 / 9e-08 Mevalonate/galactokinase family protein (.1) AT3G10700 49 / 4e-06 GalAK galacturonic acid kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G102800 [exp] 973 / 0 AT3G06580 793 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Potri.018G145700 [exp] 95 / 3e-20 AT4G16130 1435 / 0.0 arabinose kinase (.1) Potri.018G003100 [exp] 77 / 9e-15 AT4G16130 1660 / 0.0 arabinose kinase (.1) Potri.006G070500 [exp] 54 / 2e-07 AT3G10700 555 / 0.0 galacturonic acid kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037789 [exp] 832 / 0 AT3G06580 765 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10002740 [exp] 800 / 0 AT3G06580 728 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10017072 [exp] 797 / 0 AT3G06580 728 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10023094 [exp] 703 / 0 AT3G06580 635 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10016320 [exp] 552 / 0 AT3G06580 496 / 6e-176 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10016321 [exp] 367 / 6e-126 AT3G06580 338 / 8e-115 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10026983 [exp] 70 / 2e-12 AT4G16130 1013 / 0.0 arabinose kinase (.1) Lus10025946 [exp] 56 / 4e-08 AT3G10700 532 / 0.0 galacturonic acid kinase (.1) Lus10014251 [exp] 51 / 2e-06 AT3G10700 510 / 9e-180 galacturonic acid kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [poplar] [flax] S5 PF00288 [poplar] [flax] GHMP_kinases_N GHMP kinases N terminal domain CL0677 [poplar] [flax] GHMP_C PF08544 [poplar] [flax] GHMP_kinases_C GHMP kinases C terminal CL0329 [poplar] [flax] S5 PF10509 [poplar] [flax] GalKase_gal_bdg Galactokinase galactose-binding signature
Representative CDS sequence Show only first row Show all	>Potri.010G148100.1 pacid=42796873 polypeptide=Potri.010G148100.1.p locus=Potri.010G148100 ID=Potri.010G148100.1.v4.1 annot-version=v4.1 ATGGCGAAACATGAAGAAACGCCGGTTCCATGTTACTCATCGTTAGAGGCTGTTTACGGCGACGGATCTCAGCTTGAAGAAGCTAAACTTCGTTTTGATC ACTTGAAATCCAAGTTTCTTCAAGTTTTTGGTCACCCCCCTGATGTCTTTGCTCGTTCTCCAGGGAGAGTGAATTTGATTGGAGAACATATTGATTATGA AGGCTACTCAGTGTTGCCAATGGCAATAAGGCAAGATACTATTATAGCAATCCGTAAAAATAATGCAGAAAAAGTCCTTCGAATCGCCAATGTTAATGAC AAATATACGCAGTGTGATTATCCTGCTGATCCTAACCAGGCAATTGACTTGAAGAATCATAGATGGGGTCATTATTTCATTTGCGGGTATAAGGGTTATT ATGAATTTGCAAAATCAAAAGGAGTGAATGTGGGTGAGCCGGTTGGACTTGATGTTATTGTTGATGGAACTGTTCCAACAGGTTCTGGTTTGTCAAGCTC TGCTGCCTTTGTTTGTTCTGCTACCATTGCTATTATGGCTGCTTTTGATGTGAACTTTCCAAAGAAAGAAATTGCCCAACTGACATGTGAGTGTGAAAGG CACATTGGAACACAATCTGGGGGAATGGACCAGGCAATCTCTGTCATGGCCAAAACTGGATTTGCAGAGCTTATTGATTTCAACCCCATTCAGGCAACTG ATGTGCAACTTCCTGCTGGTGGAACATTTGTGCTTGCGCATTCTTTGGCAGAATCTCAGAAGGCAGTCACTGCTGCTACAAATTACAATAACAGAGTTGT TGAATGTCGACTCGCATCTATCGTACTTGGAATAAAGTTGGGAATGAAACAACAAGATGCAATATCAAATGTCAAGACTCTTTCTGATGTCGAGGGATTG TGTGTATCATTTGCTAACAGTCATGGTTCTTCTGATCCTGTCATTGCTGTTAAGGAATTTTTGAAAGAGAAACCATACACAGCTGAAGAAATTGAGGAAA TTACTGGGGAAAGTCTTCGATCAATCTTCAAAAATTCCCCATCTTCTTTAGATGTGCTAAAAGCCGCCGAGCACTACAAGTTGCATCAGAGGGCTGCTCA TGTATATTCTGAAGCCAAGCGAGTCCATGCTTTCAAGGACACAGTGTCTTCAGATTTAAGTGATGAGGACAAGCTAAAGAAGCTGGGTGAGCTTATGAAC GAGAGTCACTACAGCTGCAGCGTTCTATATGAATGCAGCTGCCCAGAGTTGGAAGAACTTGTAAAAATTTGCCGGGATAGTGATGCTTTGGGGGCAAGAC TTACAGGAGCTGGATGGGGTGGCTGTGCGGTTGCTTTGGTGAAAGAACCTATCGTCCCTCAGTTCATTCTCAATTTGAAGGAAAAGTTCTACCAATCAAG AATTGACAAGGGAGTAATCAGCAAGAATGATCTTGGACTCTATGTTTTTGCTTCAAAGCCTTCAAGTGGTGCTGCTATTTTCAGGTTCTAA
AA sequence Show only first row Show all	>Potri.010G148100.1 pacid=42796873 polypeptide=Potri.010G148100.1.p locus=Potri.010G148100 ID=Potri.010G148100.1.v4.1 annot-version=v4.1 MAKHEETPVPCYSSLEAVYGDGSQLEEAKLRFDHLKSKFLQVFGHPPDVFARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIIAIRKNNAEKVLRIANVND KYTQCDYPADPNQAIDLKNHRWGHYFICGYKGYYEFAKSKGVNVGEPVGLDVIVDGTVPTGSGLSSSAAFVCSATIAIMAAFDVNFPKKEIAQLTCECER HIGTQSGGMDQAISVMAKTGFAELIDFNPIQATDVQLPAGGTFVLAHSLAESQKAVTAATNYNNRVVECRLASIVLGIKLGMKQQDAISNVKTLSDVEGL CVSFANSHGSSDPVIAVKEFLKEKPYTAEEIEEITGESLRSIFKNSPSSLDVLKAAEHYKLHQRAAHVYSEAKRVHAFKDTVSSDLSDEDKLKKLGELMN ESHYSCSVLYECSCPELEELVKICRDSDALGARLTGAGWGGCAVALVKEPIVPQFILNLKEKFYQSRIDKGVISKNDLGLYVFASKPSSGAAIFRF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Potri.010G148100 [exp]	0	1	Pt-GAL1.3
AT5G60160			Zn-dependent exopeptidases sup...		Potri.015G092700 [exp]	3.16	0.8316
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Potri.019G089000 [exp]	3.31	0.8679
AT5G01260			Carbohydrate-binding-like fold...		Potri.006G099200 [exp]	7.34	0.8396
AT2G02370			SNARE associated Golgi protein...		Potri.001G078700 [exp]	8.36	0.8398
AT5G27410			D-aminoacid aminotransferase-l...		Potri.005G039100 [exp]	11.22	0.8096	Pt-AAT.3
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Potri.017G128900 [exp]	12.84	0.8190	Pt-MYB.42,MYB181
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.017G048900 [exp]	13.41	0.8198
AT2G47115			unknown protein		Potri.002G190200 [exp]	14.28	0.8244
AT2G46110		PANB1, KPHMT1	ketopantoate hydroxymethyltran...		Potri.014G090500 [exp]	18.00	0.7832
AT1G67325			Ran BP2/NZF zinc finger-like s...		Potri.003G172500 [exp]	18.65	0.8159

Compare expression of checked genes

Potri.010G148100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.