Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48810 727 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 315 / 2e-97 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 311 / 5e-96 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G20090 300 / 2e-92 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09060 287 / 2e-87 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 285 / 3e-87 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 283 / 3e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 280 / 2e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 280 / 4e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 275 / 4e-83 RPF2 rna processing factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G015900 [exp] 315 / 2e-97 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G013300 [exp] 311 / 1e-95 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 298 / 3e-91 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 295 / 5e-90 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G102100 [exp] 276 / 2e-89 AT3G48810 152 / 3e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G234500 [exp] 293 / 8e-89 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 288 / 2e-87 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G038400 [exp] 283 / 2e-86 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G111600 [exp] 280 / 1e-84 AT3G09060 860 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009023 [exp] 689 / 0 AT3G48810 543 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009661 [exp] 507 / 4e-175 AT3G48810 440 / 3e-149 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 324 / 2e-100 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 290 / 9e-88 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 289 / 1e-87 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012328 [exp] 289 / 4e-87 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 283 / 5e-83 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027267 [exp] 274 / 3e-82 AT1G74580 813 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 275 / 4e-82 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 278 / 1e-81 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.010G148700.1 pacid=42798957 polypeptide=Potri.010G148750.1.p locus=Potri.010G148700 ID=Potri.010G148700.1.v4.1 annot-version=v4.1 ATGTATTTGAAAGAAGGATGTTCTTTATTGTTAAAAAAGCAAAAACCTTTAGTCCCTTTTGTACTAAACACAATAAACCCACTTCAAAATGAACAAAAAG ATCTAAACCTTCTCAAAGAATCTGAAGTTTTAAACAAGTTAAAGAACGAACCCAATATTCTATTAGCTTTACATTTCTTCAAGTCAATAGCCAATTCAAA TTCCTTCAAACACACCCCATTAACATACACAACCATGATCAAAAGACTTGGTTACGAGCGCGATATAGATGGTATTCAATACCTTTTGCAGCTAATGAAG TTAGAGGGAATTAGTTGTAATGAAGATTTGTTTGTTATTGTCATTAATGCGTATCGTCGAGCTGGGTTAGCTGAACAAGCGCTGAAAACTTTTTATAGGA TTGGTGAATTTGGTTGCAAACCGAGTGTGAAGATTTATAATCATGTTTTAGATGCGTTGCTTAGTGAAAATAAGTTTCAAATGATTAATGGGATATATAA TAATATGAAGAGAGATGGGATTGAACTGAATGTTTATACTTATAATATGCTTTTGAAGGCATTGTGTAAGAATAATAGGGTGGATGCAGCCAGGAAATTA CTTGCAGAAATGTCCTATAAAGGGTGTATTCCTGATGCGGTTAGCTATACGACTGTGGTATCTTCTATGTGTAGGCTTGGTAAAGTGGAGGAGGCTAGGG AGCTATCGATGAGAATTAAATCATTTGTGCCTGTTTATAATGCTTTGATTAATGGGTTTTGTAGAGAACATAAGATGGAAGAGGTGTTTGAGTTATTTAA TGAAATGGCTGTTGAGGGAATTGATCCTGACGTCATTACTTACTCTACGGTTATTAATACACTTTCAGAGATGGGGAATGTTGAAATGGCTCTTGCTGTT CTGGCAAAGATGTTTTTGAGAGGTTGTAGTCCTAATGTTCACACTTTTACTTCCTTGATGAAAGGATATTTCATGGGGGGGAGATTGTGTGAAGCACTGG ATTTATGGAATCGAATGATCCAAGAAGGATCAGAACCCAACACCGTTGCATATAACACTCTGATACATGGTCTCTGCAGCTATGGAAAAATGGTAGAAGC TGTATCTGTTTCTCAAAAAATGGAGAGAAACGGGGTCTTCCCAAATGAGACCACATATAGTACTCTCATTGATGGCTTTGCAAAAGCTGGTTACTTGGTT GGTGCATCTGAGATATGGAACAAGATGATAACTAATGGTTGCCTTCCTAATGTTGTGGTGTATACTTGTATGGTGGATGTGCTCTGCAGGAATTCTATGT TCAACCACGCTCATCATCTTATAGAGAATATGGCGAATGGAAATTGTCCCCCAAATACAATTACATTCAATACTTTTATCAAAGGTTTATGTTGCAGTGG AAAAACAGAGTGGGCAATGACAGTGCTCCATCAAATGCGTCAATATGGGTGTGCACCTAATGTAACAACATATAACGAAGTTTTGGATGGTCTTTTCAAT GCAAAAAGAACAAGAGAAGCTCTTCAGATAGTTGGAGAGATAGAAGAAATGGAGATCAAGTCAAATTTAGTGACTTACAATACCATTTTGTCTGGATTTT GTCATGCTGGAATGTTTAAGGGTGCCTTGCAGATTGCTGGGAAACTGCTTGTGGGGGGTACCAAGCCTGATTCCATCACATATAACACAGTAATTTATGC ATACTGTAAGCAAGGCGAGGTAAAGACTGCCATCCAGCTTGTAGATAGATTAAGTAACAAGGGAGAAGGGTATCCAGATGTATTTACATACACTAGTCTT TTGTGGGGGGTCTGTAATTGGATTGGGGTAGATGACGCCGTCGTCTATCTTGATAAGATGATAAATGAAGGCATATGCCCCAATCGTGCCACATGGAATG CTTTAGTCCGTGGCTTGTTCAGCAAACTGGGTCATTTGGGACCGATTCACACTGTGGATAATATTCTGGCTAATGGGGAAGTTACATGA
AA sequence Show only first row Show all	>Potri.010G148700.1 pacid=42798957 polypeptide=Potri.010G148750.1.p locus=Potri.010G148700 ID=Potri.010G148700.1.v4.1 annot-version=v4.1 MYLKEGCSLLLKKQKPLVPFVLNTINPLQNEQKDLNLLKESEVLNKLKNEPNILLALHFFKSIANSNSFKHTPLTYTTMIKRLGYERDIDGIQYLLQLMK LEGISCNEDLFVIVINAYRRAGLAEQALKTFYRIGEFGCKPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNVYTYNMLLKALCKNNRVDAARKL LAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEARELSMRIKSFVPVYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAV LAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGYLV GASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHAHHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMTVLHQMRQYGCAPNVTTYNEVLDGLFN AKRTREALQIVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIYAYCKQGEVKTAIQLVDRLSNKGEGYPDVFTYTSL LWGVCNWIGVDDAVVYLDKMINEGICPNRATWNALVRGLFSKLGHLGPIHTVDNILANGEVT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48810			Pentatricopeptide repeat (PPR)...		Potri.010G148700 [exp]	0	1
AT1G13460			Protein phosphatase 2A regulat...		Potri.017G070100 [exp]	9.64	0.7849
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Potri.018G107000 [exp]	10.48	0.8103
AT1G77180		SKIP	chromatin protein family (.1.2...		Potri.006G163700 [exp]	13.71	0.8218
AT3G53700		MEE40	maternal effect embryo arrest ...		Potri.017G033000 [exp]	15.32	0.8193
AT3G13460		ECT2	evolutionarily conserved C-ter...		Potri.003G222700 [exp]	15.90	0.8093
AT4G04670			Met-10+ like family protein / ...		Potri.004G015200 [exp]	16.49	0.8199
AT5G53220			unknown protein		Potri.015G022500 [exp]	17.32	0.7886
AT5G18750			DNAJ heat shock N-terminal dom...		Potri.010G018800 [exp]	23.08	0.8077
AT5G62370			Tetratricopeptide repeat (TPR)...		Potri.004G200900 [exp]	23.36	0.8207
AT2G20410			RNA-binding ASCH domain protei...		Potri.019G017900 [exp]	32.18	0.7594

Compare expression of checked genes

Potri.010G148700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.