Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49580 614 / 0 Chaperone DnaJ-domain superfamily protein (.1) AT1G16680 281 / 1e-85 Chaperone DnaJ-domain superfamily protein (.1) AT1G79030 271 / 5e-82 Chaperone DnaJ-domain superfamily protein (.1) AT4G28480 59 / 5e-09 DNAJ heat shock family protein (.1.2) AT3G17830 57 / 3e-08 Molecular chaperone Hsp40/DnaJ family protein (.1) AT3G62600 57 / 3e-08 ATERDJ3B DNAJ heat shock family protein (.1) AT3G08910 57 / 3e-08 DNAJ heat shock family protein (.1) AT2G20560 56 / 3e-08 DNAJ heat shock family protein (.1) AT5G01390 56 / 3e-08 DNAJ heat shock family protein (.1.2.3.4) AT1G65280 57 / 5e-08 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G101800 [exp] 506 / 5e-175 AT5G49580 355 / 1e-116 Chaperone DnaJ-domain superfamily protein (.1) Potri.001G438300 [exp] 306 / 3e-95 AT1G79030 783 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Potri.011G142000 [exp] 296 / 1e-91 AT1G79030 749 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G198000 [exp] 59 / 4e-09 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 57 / 2e-08 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.011G057601 [exp] 57 / 2e-08 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.014G122600 [exp] 57 / 2e-08 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.019G083700 [exp] 57 / 4e-08 AT1G65280 479 / 2e-163 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.007G136700 [exp] 56 / 4e-08 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017085 [exp] 781 / 0 AT5G49580 670 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Lus10037801 [exp] 659 / 0 AT5G49580 595 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Lus10032666 [exp] 313 / 6e-98 AT1G79030 772 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Lus10043089 [exp] 197 / 8e-57 AT1G79030 398 / 6e-136 Chaperone DnaJ-domain superfamily protein (.1) Lus10017472 [exp] 64 / 2e-10 AT4G39150 519 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10028809 [exp] 64 / 2e-10 AT4G39150 517 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10014584 [exp] 62 / 5e-10 AT3G62600 521 / 0.0 DNAJ heat shock family protein (.1) Lus10032100 [exp] 62 / 6e-10 AT3G62600 526 / 0.0 DNAJ heat shock family protein (.1) Lus10041972 [exp] 60 / 3e-09 AT4G39150 534 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10017980 [exp] 60 / 3e-09 AT4G39150 532 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF14901 [poplar] [flax] Jiv90 Cleavage inducing molecular chaperone
Representative CDS sequence Show only first row Show all	>Potri.010G148900.2 pacid=42799312 polypeptide=Potri.010G148900.2.p locus=Potri.010G148900 ID=Potri.010G148900.2.v4.1 annot-version=v4.1 ATGGCTCGGAAAGGTAATCAGCATAGGAATGGGGTAGACCGCCATTCATCAAATCACAAGAAAAATGTTTCAGATTCAGATAATAATGGACGTGGAAAAG GAAGTGAAATGAAGGTTTACCCTGGAGAGGAACTCCCCAATGGCAACCAGCCAAGTAATCCTACAGATAGAGCGAGGAAAACAGCCCATGCTGAGGGTGA GGACAATCTTATGAAAAACTCTGGAGATTTTCAGAGAAAAGAGAATCAAGAGATACATGAAGTGCTGGATGTTGAGGAGCCCGCCTCTTCTATGACCAAT TCAATGGACTGTGGCAGTCCTTCGGTGGAAACTCCTGGTGTAACACAAGACAATGGAAAATTACCTGGCAGTGAAAGTGGCCCAGAGCATGCAAAAAGTG GACTGGGTCACTTGTTGAATGGTCTGCATCTGAAAAATATGATGGAAAATATGGATATGGTGGTTGGAAACTTGAGGGCATCAGCTTTGTCCATGTTGAA GGTGGCAAGTGAGTGGCTGGGGAGGCAGGAGCAACCTTTTGTTTCTCTAAAAACCAATATATATGCTTCTCGTGATTATGTTAAAATGAAGGTTGCAAAA GCATATCCTGTTGTTTTAAAATGGCTCTTGCAATTTGGGAACATTGTGCTTCTTTTGTCAATGGTATGGCTGGACTGTACTCTCAGAGGCATGGATTCCT TTTTACGGCTGGGGACAACATCCTTTTTTTCAGTCATTTGGTGTAGTATTCTGTCAGTTATTGCAATGGTTGGAATATCCAAAATTCTTATCATCCTGGC CATAGCTGCATTTGTGGGGGTTTTCATAGGTCTCATCCTTGGACTTTTGATAGTTGCCATTTCTGGACTGGTTTTCCTGTGGTTTTATGGAAGCTTCTGG ACAACAGTATTTGTTATTATCATCAGTGGCTTGGCATTCATGTTCAGCCAGGAACGTCTCACACTTTTGATCATCACTATATATTCCACATACTGTGTGT GGTCATATGCTGGATGGCTTGGTTTACTTTTGGCTTTGAATCTATCATTTATCTCAAGTGATATTCTGATATACATCCTAAAGAATAACATCAACCGACA GAGAAGATCTGGTAGAACCTCTGAACATTCTGCAGGAATGGAAGGTCGTCCAGGCTTCTTCAACGAGGACTCCTTTCATGCTTCATCCTTTGAGACTGGC CCGGGTTTTTCAGCAGATCGTAGCCCGGGAGTACCTTCAACCAGTGGGGCTGATTCCGAGTTGACCTCCGAAGAGGAAGTTGTTCGGTTATTGAACTGTA CCGATCACTACTCTGCATTGGGTTTGTCCCGATACGAAAACATGGATGTTTCTGTTTTGAAGAGAGAGTATAGGAAGAAGGCCATGCTGGTTCATCCTGA CAAGAACATGGGCAATGAGAAGGCTGCAGAAGCTTTTAAGAAACTTCAAAATGCATACGAGGTGTTACTTGATTCCTTGAAGCGAAAAGCATATGATGAT GAATTGAGAAGGGAAGACTTGCTGAACTATTTCCGTAGTTTCCAAAGCACTTCACAAAAGAATGGAGAGCATGGTCTTTTTGCCTCTGGGTTTGCACGTT CAGAGGTTGATGGTGACGACCCTTTTGGAGAATCAAGGAGAATAGCTTGCAAAAGGTGTGGCAACTTTCATCTTTGGATACATACCAAGAAATCAAAATT GCAAGCAAGATGGTGCCAGGACTGCCAAGATTTTCATCAAGCAAAAGATGGAGATGGATGGGTTGAGCAATCTTCACAACCCTTCCTTTTTGGATTACTG CAGAAGGTTGATGTTCCCACTGCATATGTTTGTGCAGATAGCAAGATATATGATGCCACTGACTGGTATATTTGTCAGGGAATGAGATGCCCAGCCAACA GTCACAAGCCAAGTTTTCATGTAAACACCAGTGTGACCTCCAAACACAATACCGGCAAAGGACCAAGTTCAGGACAAAGAAGTGGTCGGATGCCAGCCCC CAATGTGGAGGAAACCATGACAGAAGAAGAATTCTTTGAGTGGTTACAGAATGCAGTGCAAGCAGGCGTGTTCAACAACCACAGTGCTGGTACCTCTACT GAGAGCCCATCAGCCAAGGCTGGAAATGGTAAGAGCAGTGGAGGTGGCAGTAGTGGTGGCAATAAAAGGAAGAAAAAAGGGAAGAAGCAGTGGTGA
AA sequence Show only first row Show all	>Potri.010G148900.2 pacid=42799312 polypeptide=Potri.010G148900.2.p locus=Potri.010G148900 ID=Potri.010G148900.2.v4.1 annot-version=v4.1 MARKGNQHRNGVDRHSSNHKKNVSDSDNNGRGKGSEMKVYPGEELPNGNQPSNPTDRARKTAHAEGEDNLMKNSGDFQRKENQEIHEVLDVEEPASSMTN SMDCGSPSVETPGVTQDNGKLPGSESGPEHAKSGLGHLLNGLHLKNMMENMDMVVGNLRASALSMLKVASEWLGRQEQPFVSLKTNIYASRDYVKMKVAK AYPVVLKWLLQFGNIVLLLSMVWLDCTLRGMDSFLRLGTTSFFSVIWCSILSVIAMVGISKILIILAIAAFVGVFIGLILGLLIVAISGLVFLWFYGSFW TTVFVIIISGLAFMFSQERLTLLIITIYSTYCVWSYAGWLGLLLALNLSFISSDILIYILKNNINRQRRSGRTSEHSAGMEGRPGFFNEDSFHASSFETG PGFSADRSPGVPSTSGADSELTSEEEVVRLLNCTDHYSALGLSRYENMDVSVLKREYRKKAMLVHPDKNMGNEKAAEAFKKLQNAYEVLLDSLKRKAYDD ELRREDLLNYFRSFQSTSQKNGEHGLFASGFARSEVDGDDPFGESRRIACKRCGNFHLWIHTKKSKLQARWCQDCQDFHQAKDGDGWVEQSSQPFLFGLL QKVDVPTAYVCADSKIYDATDWYICQGMRCPANSHKPSFHVNTSVTSKHNTGKGPSSGQRSGRMPAPNVEETMTEEEFFEWLQNAVQAGVFNNHSAGTST ESPSAKAGNGKSSGGGSSGGNKRKKKGKKQW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49580			Chaperone DnaJ-domain superfam...		Potri.010G148900 [exp]	0	1
AT3G19740			P-loop containing nucleoside t...		Potri.005G093300 [exp]	4.47	0.8834
AT5G41130			Esterase/lipase/thioesterase f...		Potri.001G324400 [exp]	6.63	0.8685
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Potri.017G043100 [exp]	7.48	0.9074
AT2G47300			ribonuclease Ps (.2.3)		Potri.002G194100 [exp]	10.39	0.8648
AT4G14570		AtAARE, AARE	acylamino acid-releasing enzym...		Potri.008G160400 [exp]	10.95	0.8866
AT1G21650		SECA2	Preprotein translocase SecA fa...		Potri.002G078000 [exp]	11.31	0.8781
AT1G09420		G6PD4	glucose-6-phosphate dehydrogen...		Potri.013G005200 [exp]	12.56	0.8570
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Potri.010G099200 [exp]	12.60	0.9097
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Potri.012G080900 [exp]	14.79	0.9076	DXR.1
AT5G36930			Disease resistance protein (TI...		Potri.001G066500 [exp]	15.29	0.8703

Compare expression of checked genes

Potri.010G148900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.