Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49610 528 / 0 F-box family protein (.1) AT1G33530 85 / 5e-18 F-box family protein (.1) AT2G02030 82 / 4e-17 F-box family protein (.1) AT1G12870 77 / 2e-15 F-box and associated interaction domains-containing protein (.1) AT1G12855 72 / 2e-13 F-box family protein (.1) AT3G07870 67 / 3e-12 F-box and associated interaction domains-containing protein (.1) AT2G43440 66 / 7e-12 F-box and associated interaction domains-containing protein (.1) AT5G07610 66 / 1e-11 F-box family protein (.1) AT2G43445 66 / 1e-11 F-box and associated interaction domains-containing protein (.1) AT1G13200 65 / 2e-11 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G038000 [exp] 110 / 4e-27 AT1G64290 175 / 3e-51 F-box protein-related (.1) Potri.010G224400 [exp] 103 / 2e-24 AT1G64295 161 / 1e-45 F-box associated ubiquitination effector family protein (.1) Potri.014G162600 [exp] 99 / 5e-23 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.002G223000 [exp] 98 / 1e-22 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.001G224200 [exp] 95 / 2e-21 AT3G07870 105 / 4e-25 F-box and associated interaction domains-containing protein (.1) Potri.017G066400 [exp] 93 / 4e-21 AT1G64295 125 / 9e-33 F-box associated ubiquitination effector family protein (.1) Potri.008G214000 [exp] 92 / 2e-20 AT1G64295 140 / 3e-38 F-box associated ubiquitination effector family protein (.1) Potri.008G215800 [exp] 89 / 2e-19 AT3G07870 101 / 3e-23 F-box and associated interaction domains-containing protein (.1) Potri.007G027300 [exp] 88 / 3e-19 AT5G49610 80 / 2e-16 F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017086 [exp] 576 / 0 AT5G49610 500 / 7e-179 F-box family protein (.1) Lus10037802 [exp] 569 / 0 AT5G49610 497 / 1e-177 F-box family protein (.1) Lus10036105 [exp] 69 / 2e-12 AT3G07870 206 / 1e-61 F-box and associated interaction domains-containing protein (.1) Lus10015775 [exp] 68 / 3e-12 AT1G27340 598 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037030 [exp] 67 / 6e-12 AT1G27340 615 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10018106 [exp] 66 / 8e-12 AT3G06240 95 / 3e-21 F-box family protein (.1) Lus10040800 [exp] 66 / 1e-11 AT3G21120 84 / 8e-18 F-box and associated interaction domains-containing protein (.1) Lus10014320 [exp] 65 / 2e-11 AT5G07610 74 / 2e-14 F-box family protein (.1) Lus10028682 [exp] 65 / 3e-11 AT5G49610 62 / 2e-10 F-box family protein (.1) Lus10016866 [exp] 64 / 7e-11 AT1G32420 84 / 2e-17 F-box and associated interaction domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.010G149000.3 pacid=42797551 polypeptide=Potri.010G149000.3.p locus=Potri.010G149000 ID=Potri.010G149000.3.v4.1 annot-version=v4.1 ATGAATTCAAGAGATGGGTTTTTACCTGATGAAGTTATTATTCAAGTTCTCGCTAGATTGCCTGTTAAGTCTTTGTTTAGAGCCAAAACTGTATGCAAAC TTTGGTACAAATTATCATCAGATAAGTATTTTGTTCAACTATACAATGAAGTAGCAACTAAGAACTCAATGGTATTGGTAGAGGTTTCAGATTCACCAGA GTTGAAATCTAGCTTAATTTGTGCTGATAATTTAAGGGGTGTATCAGAACTTTCACTGGATTTCTTGAAAGATAGGGTGAAAGTCAGGGCCTCATGTAAT GGCTTGTTGTGTTGCTCTAGTATCCCTGATAAGGGTGTTTATTATGTTTGTAATCCGATGACCAGAGAGTTCAGGTTGCTTCCCAGGAGTAGGGAGAGGC CTGTGACTAGGTTTTATCCTGATGGTGAGGCTACTCTTGTTGGTTTAGGTTGTAATTTATCAGTGCAGAAGTTTAATGTTGTGTTGGCTGGTTATCATCG GACTTTCGGTCACAGGCCAGATGGGACATTTATATGCATGGTATTTGATTCGGATACAAATAAATGGAGGAAGTTTGTATCTTTTCAAGATGATCGTTTT ACACTCATGAATAGGAACCAGGTTGTTTTTGTCCATGGTTCGCTTCATTGGTTAACTAGTGGTTGTTCGTATATACTTTCACTTGATTTGAATTGTGATG TTTGGAGGAAGATTTCGTTGCCAGATGAGGTGATTTACAGGGCGGGGAATAGAGCGCATTTGGTGGAGTTGGATGGGTGCTTGTCTGTGATTCAGATATC AGAAGCATGGATGAAAATTTGGGCGATGAAGGACTATGAGAGTGAACAGTGGCATTTGGAGGATAGGGTGAGCTTGAGATGTATTAGGGGAATGGTACCT GGTATTTTCCCAATAAGCCAGACGAGAGAATATGTTTTCCTGGCAACGTATAAGCAGGTTTTGGTGTATCAGCGGAAGAGTAGAGTGTGGAAAGAGATGT ATTCTGTGAAGAACAGTTCTCCACTGCCATTGTGGTTCTCAGCACATGCCTTCCGGACCTCAATCTTCTTGTGTAATTAA
AA sequence Show only first row Show all	>Potri.010G149000.3 pacid=42797551 polypeptide=Potri.010G149000.3.p locus=Potri.010G149000 ID=Potri.010G149000.3.v4.1 annot-version=v4.1 MNSRDGFLPDEVIIQVLARLPVKSLFRAKTVCKLWYKLSSDKYFVQLYNEVATKNSMVLVEVSDSPELKSSLICADNLRGVSELSLDFLKDRVKVRASCN GLLCCSSIPDKGVYYVCNPMTREFRLLPRSRERPVTRFYPDGEATLVGLGCNLSVQKFNVVLAGYHRTFGHRPDGTFICMVFDSDTNKWRKFVSFQDDRF TLMNRNQVVFVHGSLHWLTSGCSYILSLDLNCDVWRKISLPDEVIYRAGNRAHLVELDGCLSVIQISEAWMKIWAMKDYESEQWHLEDRVSLRCIRGMVP GIFPISQTREYVFLATYKQVLVYQRKSRVWKEMYSVKNSSPLPLWFSAHAFRTSIFLCN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49610			F-box family protein (.1)		Potri.010G149000 [exp]	0	1
AT5G43260			chaperone protein dnaJ-related...		Potri.003G171800 [exp]	21.11	0.9003
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Potri.018G032500 [exp]	28.63	0.8940
					Potri.015G023750 [exp]	31.74	0.8878
AT2G41000			Chaperone DnaJ-domain superfam...		Potri.006G024700 [exp]	35.07	0.8831
AT1G75100		JAC1	J-domain protein required for ...		Potri.014G042600 [exp]	46.98	0.8810
AT2G35658			unknown protein		Potri.001G152700 [exp]	49.29	0.8613
AT1G07650			Leucine-rich repeat transmembr...		Potri.004G063600 [exp]	55.99	0.8825
AT1G18390			Protein kinase superfamily pro...		Potri.015G045101 [exp]	65.95	0.8762
AT1G71180			6-phosphogluconate dehydrogena...		Potri.001G211500 [exp]	81.60	0.8636
AT3G19660			unknown protein		Potri.017G109900 [exp]	88.47	0.8650

Compare expression of checked genes

Potri.010G149000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.