Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17180 563 / 0 SCPL33 serine carboxypeptidase-like 33 (.1) AT4G15100 441 / 2e-151 SCPL30 serine carboxypeptidase-like 30 (.1) AT1G11080 430 / 4e-147 SCPL31 serine carboxypeptidase-like 31 (.1.2) AT1G61130 423 / 4e-145 SCPL32 serine carboxypeptidase-like 32 (.1) AT4G30610 416 / 3e-142 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT5G23210 408 / 3e-139 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT5G08260 399 / 3e-135 SCPL35 serine carboxypeptidase-like 35 (.1) AT2G24000 384 / 8e-130 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT2G35780 383 / 2e-129 SCPL26 serine carboxypeptidase-like 26 (.1) AT2G24010 379 / 7e-128 SCPL23 serine carboxypeptidase-like 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G046600 [exp] 425 / 1e-145 AT1G11080 674 / 0.0 serine carboxypeptidase-like 31 (.1.2) Potri.007G072300 [exp] 420 / 1e-143 AT5G08260 632 / 0.0 serine carboxypeptidase-like 35 (.1) Potri.005G091700 [exp] 419 / 4e-143 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.018G105700 [exp] 404 / 2e-137 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G037800 [exp] 403 / 5e-137 AT1G11080 653 / 0.0 serine carboxypeptidase-like 31 (.1.2) Potri.006G183200 [exp] 402 / 5e-137 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G091800 [exp] 403 / 6e-137 AT5G23210 585 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.008G041800 [exp] 395 / 3e-134 AT3G07990 736 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.010G220100 [exp] 392 / 5e-133 AT3G07990 735 / 0.0 serine carboxypeptidase-like 27 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037810 [exp] 603 / 0 AT3G17180 565 / 0.0 serine carboxypeptidase-like 33 (.1) Lus10010190 [exp] 425 / 3e-145 AT5G23210 647 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10011213 [exp] 422 / 1e-144 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2) Lus10018467 [exp] 422 / 2e-144 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2) Lus10017391 [exp] 415 / 2e-141 AT5G23210 642 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10019954 [exp] 404 / 6e-137 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10015489 [exp] 396 / 5e-134 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10023505 [exp] 384 / 1e-129 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10040387 [exp] 378 / 3e-127 AT3G07990 715 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10015382 [exp] 372 / 2e-124 AT3G02110 731 / 0.0 serine carboxypeptidase-like 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.010G149400.4 pacid=42799150 polypeptide=Potri.010G149400.4.p locus=Potri.010G149400 ID=Potri.010G149400.4.v4.1 annot-version=v4.1 ATGGCTTTAATTGATAGACCTTTCCTATCTCTCTTGTGCATATATTTATTTCTTGGTTCCTTAGTTATTCCTTGCATTAAAGCATTAGAAACAAACCCTG AAACTCAGGAATCTGATAGAGTAATTAATTTGCCGGGCCAACCTTCTAACCCGTCAATCTCACAGTTCTCAGGTTATGTCACCGTCAATAAAGAACATGG GAGAGCCCTTTTTTACTGGTTCTTTGAAGCTCAATCTGAAACATCCAAGAAGCCTCTCCTTCTGTGGCTAAATGGAGGGCCCGGCTGTTCATCTATTGGA TATGGTGCTGCTTCAGAGTTAGGTCCACTAAGAGTTTCTAAAGATGGCGCTGGCGTTTACTTCAACGAATATGCTTGGAGTAAAGAAGCAAATATACTAT TTCTTGAATCCCCAGTTGGAGTTGGGTTCTCTTACACCAACACCTCATCTGATCTCACCTTATTAGATGATAATTTTGTGGCTGAGGATGCCTATACTTT CTTGGTGAAATGGTTGCAAAGATTTCCCCAATACAAAAGCCGTGATTTCTTCATTTCAGGAGAGAGTTATGCTGGCCACTATGTGCCTCAGCTGGCAGAG CTTGTCTATGATAGAAACAAGGATAAAACTAAATATCCACTGATCAATCTGAAGGGTTTTATTGTAGGAAATCCAGAAACCAATGACTACTATGATTACA AAGGCTTGCTAGAATATGCGTGGAGCCATGCTGTAATATCAGACCAGATCTATGACAAGGCCAAACAAGTATGTGATTTCACAGTTTCCAACTGGTCTAG TGACTGCAATGACGCCATGAACTTAGTGTTCGAGAAATACAACGAAATTGATATCTACAATATATATGCCCCTACATGTCTTATTAACACTACATCTTCA TCTATTGGTAGCAATGATTCACTCACCAAGGTGAACAATTACATGATAAGAAGGCTTAGAATCCCTGGAGGTTACGACCCTTGTTATTCAACATACACTG AGGAGTATTTTAACAGGGCTGATGTTCAATCATCCCTTCATGCAAAAATTAGTGGAAATTCTAGAGGGAAATGGAGGGTCTGCAACGCTCTCATTCTGTA CAAATACAATTTTACTGTGTTCTCTGTCCTCCCAATCTACACCAAGCTCATCAAGGGCGGTCTCAAGATCTGGATATACAGTGGGGACGCAGATGGCAGA GTACCCGTTATTGGGTCACGATATTGTATTGAAGCTCTTGGACTGCCTCTCAAATCTGCCTGGCGTTCTTGGTTTCACAACCATCAGGTTCTTTTTGCCT TGCCATCGTTTCCTTGCTTCTTTCCTTCAATCAAGTGCTATAATATTATCCTACTTTATTTTATCGAAAGGTTCTTTCAAAAACCTAGAAAAAAAAGAAA AAAAAGAAGAAGAGATTTATTAGCGGAACCCACTTCTTTAATGCGCTAA
AA sequence Show only first row Show all	>Potri.010G149400.4 pacid=42799150 polypeptide=Potri.010G149400.4.p locus=Potri.010G149400 ID=Potri.010G149400.4.v4.1 annot-version=v4.1 MALIDRPFLSLLCIYLFLGSLVIPCIKALETNPETQESDRVINLPGQPSNPSISQFSGYVTVNKEHGRALFYWFFEAQSETSKKPLLLWLNGGPGCSSIG YGAASELGPLRVSKDGAGVYFNEYAWSKEANILFLESPVGVGFSYTNTSSDLTLLDDNFVAEDAYTFLVKWLQRFPQYKSRDFFISGESYAGHYVPQLAE LVYDRNKDKTKYPLINLKGFIVGNPETNDYYDYKGLLEYAWSHAVISDQIYDKAKQVCDFTVSNWSSDCNDAMNLVFEKYNEIDIYNIYAPTCLINTTSS SIGSNDSLTKVNNYMIRRLRIPGGYDPCYSTYTEEYFNRADVQSSLHAKISGNSRGKWRVCNALILYKYNFTVFSVLPIYTKLIKGGLKIWIYSGDADGR VPVIGSRYCIEALGLPLKSAWRSWFHNHQVLFALPSFPCFFPSIKCYNIILLYFIERFFQKPRKKRKKRRRDLLAEPTSLMR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17180		SCPL33	serine carboxypeptidase-like 3...		Potri.010G149400 [exp]	0	1
AT3G03190		ATGSTF6, ATGSTF...	ARABIDOPSIS GLUTATHIONE-S-TRAN...		Potri.002G015100 [exp]	2.00	0.8886
AT1G49430		LRD2, LACS2	LATERAL ROOT DEVELOPMENT 2, lo...		Potri.009G109900 [exp]	7.07	0.8825	Pt-LACS2.2
AT1G07570		APK1A	Protein kinase superfamily pro...		Potri.001G240400 [exp]	12.68	0.8386	Pt-APK1.2
AT4G00400		AtGPAT8, GPAT8	glycerol-3-phosphate acyltrans...		Potri.014G085500 [exp]	14.28	0.8776
AT2G45970		CYP86A8, LCR	LACERATA, "cytochrome P450, fa...		Potri.014G085800 [exp]	29.66	0.8725	Pt-CYP86.6
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Potri.005G086500 [exp]	32.40	0.8427	Pt-BRI1.1
AT2G26910		PEC1, ABCG32, P...	PERMEABLE CUTICLE 1, ATP-bindi...		Potri.018G074500 [exp]	33.46	0.8651
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Potri.002G018300 [exp]	41.85	0.8476	CADL2
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Potri.005G073300 [exp]	46.28	0.8416
AT1G29730			Leucine-rich repeat transmembr...		Potri.016G012300 [exp]	46.95	0.8451

Compare expression of checked genes

Potri.010G149400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.