Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SFR2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06510 832 / 0 SFR2, ATSFR2 SENSITIVE TO FREEZING 2, Glycosyl hydrolase superfamily protein (.1.2) AT3G60120 126 / 1e-30 BGLU27 beta glucosidase 27 (.1) AT2G25630 123 / 1e-29 BGLU14 beta glucosidase 14 (.1) AT1G26560 122 / 2e-29 BGLU40 beta glucosidase 40 (.1) AT3G60130 121 / 2e-29 BGLU16 beta glucosidase 16 (.1.2.3) AT3G60140 121 / 1e-28 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1) AT5G36890 120 / 1e-28 BGLU42 beta glucosidase 42 (.1.2) AT2G44470 120 / 3e-28 BGLU29 beta glucosidase 29 (.1.2.3) AT5G44640 117 / 8e-28 BGLU13 beta glucosidase 13 (.1) AT2G44450 115 / 3e-27 BGLU15 beta glucosidase 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G040700 [exp] 125 / 2e-30 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.008G094200 [exp] 124 / 5e-30 AT1G26560 798 / 0.0 beta glucosidase 40 (.1) Potri.004G019366 [exp] 120 / 1e-28 AT1G61820 608 / 0.0 beta glucosidase 46 (.1.3) Potri.001G403900 [exp] 115 / 4e-27 AT4G21760 516 / 7e-180 beta-glucosidase 47 (.1) Potri.001G015100 [exp] 115 / 4e-27 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.010G159900 [exp] 114 / 1e-26 AT1G26560 795 / 0.0 beta glucosidase 40 (.1) Potri.001G227200 [exp] 114 / 2e-26 AT2G44480 614 / 0.0 beta glucosidase 17 (.1.2) Potri.001G227300 [exp] 113 / 2e-26 AT2G44480 585 / 0.0 beta glucosidase 17 (.1.2) Potri.010G178800 [exp] 113 / 2e-26 AT5G36890 714 / 0.0 beta glucosidase 42 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011147 [exp] 1003 / 0 AT3G06510 826 / 0.0 SENSITIVE TO FREEZING 2, Glycosyl hydrolase superfamily protein (.1.2) Lus10043048 [exp] 933 / 0 AT3G06510 767 / 0.0 SENSITIVE TO FREEZING 2, Glycosyl hydrolase superfamily protein (.1.2) Lus10024065 [exp] 131 / 3e-32 AT5G44640 511 / 2e-178 beta glucosidase 13 (.1) Lus10004654 [exp] 125 / 3e-30 AT1G26560 773 / 0.0 beta glucosidase 40 (.1) Lus10031234 [exp] 119 / 4e-28 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10031808 [exp] 116 / 3e-27 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10012687 [exp] 115 / 6e-27 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2) Lus10008503 [exp] 115 / 9e-27 AT2G44450 489 / 2e-169 beta glucosidase 15 (.1) Lus10037987 [exp] 115 / 1e-26 AT5G54570 662 / 0.0 beta glucosidase 41 (.1) Lus10019531 [exp] 114 / 1e-26 AT2G44480 597 / 0.0 beta glucosidase 17 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00232 [poplar] [flax] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Potri.010G149500.1 pacid=42799206 polypeptide=Potri.010G149500.1.p locus=Potri.010G149500 ID=Potri.010G149500.1.v4.1 annot-version=v4.1 ATGCCAATTTTCGCTCTCTTTATATCTGCGGCGAAACTCGCCGGAGTTCTAGCGACAGTCACCGTCGCCGCCAACGTCTTCTCTTTCTCGCTTTACCGGA AGAAGAACCTCAAACCTTTCAAGTCACCTATCGACGAGTCAGCTGAGATTCTTGCGTCTTTCAATTTAAACGAAGGAGAAGATGAGTTTTTCTTTGGATT GGCAACCGCCCCGGCCCATGTTGAGGACAGGCTTAATGATTCTTGGCTTCAGTTCGCAGAAGAAAATCCTTGTGACAAATCACAGCCAGACCAGGGCATG GAAACAGCAGATGCGCTGATGGGTTCGGCTGCTGGTGATGGTGGATCTCAGCCAGCTTCTGTTTCTAATAAAGATGTGAATAAGGTGGATATGAAGAAGA GGAAGCCTCTCAAAGTAGCTATGGAAGCCATGATCAGAGGGTTTGAAAAGCATGCAGAAGATGAACTGCCTACGACAAACGAAGAGTGTCATCACAATGT AGCTGCATGGCACAATGTTCCCCACCCGGAAGAGAGGCTGAGATTTTGGTCTGATCCTGATACAGAGCTGAAGCTGGCAAAGGATACTGGTGTTAGTGTC TTTCGAATGGGAATTGATTGGACAAGAATCATGCCAGAGGAGCCTGTCAATGGGCTTAAAGAGACTGTTAATTTTGCTGCATTGGAGCGATATAAGTGGA TCATCACCAGAGTTCACTCTTATGGAATGAAGGTGATGTTGACCCTGTTCCATCACTCATTGCCACCATGGGCTGGTGAATATGGTGGATGGAAGCTGGA GAAAACTGTTGATTATTTTATGGATTTTACCAGGCTTATTGTTGACAGTGTATCAGAGCTTGTGGACTATTGGGTGATATTTAATGAGCCTCATGTCTTT TGCATGCTTACTTATTGTGCGGGTGCTTGGCCAGGCGGTCATCCTGATATGCTGGAAGTTGCCACTTCTGCTCTACCAACAGGTGTTTTCAACCAGGCCA TGCATTGGATAGCTATTGCACACTCAAAGGCCTACGACTATATCCATGGAAAGAGCACCTCATCAGAGTCAATAGTTGGGGTAGCACACCATGTATCATT CATGAGGCCATATGGGTTGTTTGATGTTGCTGCTGTTTCAGTGGCCAACTCCCTCACCCTTTTCCCATATGTGGATAGTATCTCCAATAAGCTGGATTTT ATTGGAATAAACTACTATGGACAGGAAGTGGTATGTGGTGCTGGCCTGAAATTAGTAGACACCAATGAATATAGTGAATCTGGACGTGGAGTATATCCTG ATGGCCTGTATCGCACGCTAATTCAATTCCATGAGAGGTACAAACATCTAAAGGTTCCTTACATTATTACGGAGAATGGCGTTTCTGATGAGACAGATCT GATTCGTCGACCATATATTTTGGAACATTTACTAGCTGTTTATGCAGCCATGATCATGGGCATCCCTGTGCTTGGTTACTTCTTCTGGACTATTTCTGAC AATTGGGAGTGGGCTGATGGATATGGTCCCAAGTTTGGACTGGTGGCAGTTGATCGTGAAAACAATTTATCAAGGATTCCTCGTCCTTCATATCATCTAT TCTCCAAGGTCGCATCTACAGGGATGATCACACGTGAAGATCGGGCACGTGCATGGAATGACCTCCAAAGAGCTGCTAAAGAGAAAAAAACAAGGCCATT TTATCGGGCGGTGAATAAATATGGTTTAATGTTCTCAGGAGGGCTTGACCAACCTATACAGCGGCCATATATTGAAAGAGATTGGCGATTTGGACATTAT GAGATGGAAGGTCTCCAGGACCCGTTAAGCCGCCTGTCAAGATGCTTTCTTCGACCATTTTCGATCAAAAGTAAAAGAAAAGATTGGAAGGATGACACTG AATTGATTCTCCAGCCTCTAACATAA
AA sequence Show only first row Show all	>Potri.010G149500.1 pacid=42799206 polypeptide=Potri.010G149500.1.p locus=Potri.010G149500 ID=Potri.010G149500.1.v4.1 annot-version=v4.1 MPIFALFISAAKLAGVLATVTVAANVFSFSLYRKKNLKPFKSPIDESAEILASFNLNEGEDEFFFGLATAPAHVEDRLNDSWLQFAEENPCDKSQPDQGM ETADALMGSAAGDGGSQPASVSNKDVNKVDMKKRKPLKVAMEAMIRGFEKHAEDELPTTNEECHHNVAAWHNVPHPEERLRFWSDPDTELKLAKDTGVSV FRMGIDWTRIMPEEPVNGLKETVNFAALERYKWIITRVHSYGMKVMLTLFHHSLPPWAGEYGGWKLEKTVDYFMDFTRLIVDSVSELVDYWVIFNEPHVF CMLTYCAGAWPGGHPDMLEVATSALPTGVFNQAMHWIAIAHSKAYDYIHGKSTSSESIVGVAHHVSFMRPYGLFDVAAVSVANSLTLFPYVDSISNKLDF IGINYYGQEVVCGAGLKLVDTNEYSESGRGVYPDGLYRTLIQFHERYKHLKVPYIITENGVSDETDLIRRPYILEHLLAVYAAMIMGIPVLGYFFWTISD NWEWADGYGPKFGLVAVDRENNLSRIPRPSYHLFSKVASTGMITREDRARAWNDLQRAAKEKKTRPFYRAVNKYGLMFSGGLDQPIQRPYIERDWRFGHY EMEGLQDPLSRLSRCFLRPFSIKSKRKDWKDDTELILQPLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06510		SFR2, ATSFR2	SENSITIVE TO FREEZING 2, Glyco...		Potri.010G149500 [exp]	0	1	Pt-SFR2.2
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Potri.010G062300 [exp]	2.44	0.9396
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Potri.009G043800 [exp]	3.31	0.9498
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Potri.015G047500 [exp]	5.09	0.9403
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.013G026600 [exp]	7.74	0.9128
AT1G54570			Esterase/lipase/thioesterase f...		Potri.013G033600 [exp]	8.36	0.9371
AT1G54570			Esterase/lipase/thioesterase f...		Potri.005G046700 [exp]	8.77	0.9279
AT1G54570			Esterase/lipase/thioesterase f...		Potri.013G033300 [exp]	8.94	0.9395
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Potri.001G407800 [exp]	12.72	0.9085
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Potri.014G139500 [exp]	14.89	0.9297	Pt-VAR2.3
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Potri.018G081200 [exp]	15.49	0.9259

Compare expression of checked genes

Potri.010G149500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.