Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GA2ox5,Pt-GA2.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47990 318 / 3e-108 ATGA2OX4 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) AT1G02400 312 / 2e-105 ATGA2OX4, ATGA2OX6, DTA1 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) AT1G30040 257 / 7e-84 ATGA2OX2 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) AT2G34555 256 / 1e-83 ATGA2OX3 gibberellin 2-oxidase 3 (.1) AT1G78440 246 / 1e-79 ATGA2OX1 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) AT2G38240 135 / 7e-37 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 134 / 2e-36 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19010 131 / 3e-35 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT4G21200 130 / 3e-35 ATGA2OX8 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) AT1G78550 129 / 2e-34 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G101600 [exp] 559 / 0 AT1G47990 350 / 2e-120 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) Potri.002G191900 [exp] 400 / 3e-140 AT1G02400 394 / 7e-138 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Potri.014G117300 [exp] 389 / 1e-135 AT1G02400 367 / 2e-127 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Potri.011G095600 [exp] 312 / 4e-105 AT1G78440 404 / 4e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.001G378400 [exp] 306 / 2e-103 AT1G78440 404 / 1e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.004G065000 [exp] 289 / 1e-96 AT1G30040 448 / 6e-159 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) Potri.015G002800 [exp] 154 / 8e-44 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 151 / 7e-43 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 144 / 3e-40 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017094 [exp] 347 / 1e-119 AT1G02400 305 / 4e-103 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10009998 [exp] 335 / 1e-114 AT1G02400 362 / 3e-125 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10025016 [exp] 334 / 4e-114 AT1G02400 367 / 4e-127 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10037816 [exp] 325 / 2e-111 AT1G02400 298 / 4e-101 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10004511 [exp] 314 / 4e-106 AT1G02400 347 / 3e-119 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10023311 [exp] 224 / 2e-71 AT1G30040 381 / 6e-133 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) Lus10038498 [exp] 160 / 4e-48 AT1G78440 258 / 2e-86 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Lus10011476 [exp] 154 / 2e-43 AT1G15550 412 / 1e-143 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10032930 [exp] 144 / 6e-40 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015573 [exp] 143 / 8e-40 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.010G149700.4 pacid=42798105 polypeptide=Potri.010G149700.4.p locus=Potri.010G149700 ID=Potri.010G149700.4.v4.1 annot-version=v4.1 ATGGTAGTGGCATCCCCAACTCAAATTCACGGGGAAAAACTCCTGGCCATTGAGCTTCCTGTAATAGATCTCTCAGGCGAGAGATCAATGGTGTCCAGTC TCATTGTCAAAGCCTGTGAAGAATATGGTTTTTTCAAGGTAAAAAACCATGGCGTTCCTCATGACATCATTGCCAAAATGGAAAACGAAAGTTTCAACTT CTTTGCCAAAACATTCGATGAAAAGCAAAAGGCTGGGCTTGATAATTCCTTTGGTTATGGCTGCAAAAACATTGGCTTTAATGGTGATACAGGAGAGGTT GAATATCTACTTTGTAATACCAATCCTCTCTCCATTGCTGAAAGATCCAAAACCATCTCCAATGACCCTACAGAATTCAGCTCTGCAATGAGCGGCTACA TAGAAGCAGTTAGGGAGCTGGCATGTGAGTTATTAGATCTGATGGCAGAGGGATTGTGGGTCCCAGATAGATCAGTGTTCAGTCGACTAATCAGAGATGA TGACAGTGACTCAATCATCAGGTTAAATCACTACCCTGCCATGCCTATACTCTGCAAGGATAAGGACTCCTCATCACCTTGTAACCACAACAAGGTAGGA TTTGGAGAGCATTCTGACCCTCAGATCTTGACCATCTTAAGATCCAACGACGTGGGTGGCCTTCAGATTTCCCTGAATGATGGTGCCTGGGTTCCAGTAA CACCTGACCCCACTGCCTTCTGTGTTAATGTGGGTGACTTGTTACAGGCAATGACAAATGGGAGATTTGTAAGTGTGAGGCACAAAGCCCTAACCAACTC ATACAAGTCTAGAATGTCAATGGCCTATTTTGCTGCACCCCCACTTAATGCAAGGATCGCTGTTCCACCAGAAATGGTTACACCCATCAAGCCTGCCTTA TACAGGCCTTTCTCCTGGGCTGAATTCAAGAAAGCTGCTTTTGCTCTGCGACTTGGAGATAGCCGCCTTGGTCTATTCATGCTGGAAGTAGATGACCAAG TTGCTTGA
AA sequence Show only first row Show all	>Potri.010G149700.4 pacid=42798105 polypeptide=Potri.010G149700.4.p locus=Potri.010G149700 ID=Potri.010G149700.4.v4.1 annot-version=v4.1 MVVASPTQIHGEKLLAIELPVIDLSGERSMVSSLIVKACEEYGFFKVKNHGVPHDIIAKMENESFNFFAKTFDEKQKAGLDNSFGYGCKNIGFNGDTGEV EYLLCNTNPLSIAERSKTISNDPTEFSSAMSGYIEAVRELACELLDLMAEGLWVPDRSVFSRLIRDDDSDSIIRLNHYPAMPILCKDKDSSSPCNHNKVG FGEHSDPQILTILRSNDVGGLQISLNDGAWVPVTPDPTAFCVNVGDLLQAMTNGRFVSVRHKALTNSYKSRMSMAYFAAPPLNARIAVPPEMVTPIKPAL YRPFSWAEFKKAAFALRLGDSRLGLFMLEVDDQVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47990		ATGA2OX4	Arabidopsis thaliana gibberell...		Potri.010G149700 [exp]	0	1	GA2ox5,Pt-GA2.3
AT5G25320			ACT-like superfamily protein (...		Potri.006G256500 [exp]	8.00	0.7268
					Potri.011G108300 [exp]	10.90	0.8428
AT5G17910			unknown protein		Potri.001G249000 [exp]	11.18	0.8481
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.018G012700 [exp]	18.70	0.8250
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G023700 [exp]	19.28	0.8446
AT2G16910	bHLH	AMS, bHLH021	ABORTED MICROSPORES, basic hel...		Potri.010G041500 [exp]	22.80	0.6896
AT5G61520			Major facilitator superfamily ...		Potri.016G120700 [exp]	23.47	0.7671
AT4G08850			Leucine-rich repeat receptor-l...		Potri.012G124300 [exp]	25.45	0.7989
AT4G20800			FAD-binding Berberine family p...		Potri.001G459200 [exp]	37.54	0.7875
AT4G00870	bHLH	bHLH014	basic helix-loop-helix (bHLH) ...		Potri.014G103700 [exp]	39.88	0.7118

Compare expression of checked genes

Potri.010G149700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.