Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17205 1506 / 0 UPL6 ubiquitin protein ligase 6 (.1.2.3) AT3G53090 318 / 5e-92 UPL7 ubiquitin-protein ligase 7 (.1.2) AT1G55860 219 / 4e-58 UPL1 ubiquitin-protein ligase 1 (.1.2) AT1G70320 215 / 1e-56 UPL2 ubiquitin-protein ligase 2 (.1) AT5G02880 135 / 6e-32 UPL4 ubiquitin-protein ligase 4 (.1) AT4G38600 115 / 8e-26 UPL3, KAK UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) AT4G12570 89 / 8e-18 UPL5 ubiquitin protein ligase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G101300 [exp] 1911 / 0 AT3G17205 1432 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.016G096500 [exp] 319 / 3e-92 AT3G53090 1447 / 0.0 ubiquitin-protein ligase 7 (.1.2) Potri.001G368600 [exp] 214 / 4e-56 AT1G55860 4297 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.002G110500 [exp] 211 / 2e-55 AT1G55860 1125 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.011G094100 [exp] 211 / 2e-55 AT1G55860 4187 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.016G085200 [exp] 134 / 2e-31 AT5G02880 1634 / 0.0 ubiquitin-protein ligase 4 (.1) Potri.006G132000 [exp] 119 / 8e-27 AT5G02880 1614 / 0.0 ubiquitin-protein ligase 4 (.1) Potri.004G174700 [exp] 110 / 2e-24 AT4G38600 2241 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Potri.009G134300 [exp] 110 / 3e-24 AT4G38600 2234 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017098 [exp] 1273 / 0 AT3G17205 1249 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Lus10037820 [exp] 1186 / 0 AT3G17205 1099 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Lus10035589 [exp] 320 / 2e-92 AT3G53090 1385 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10008636 [exp] 283 / 2e-79 AT3G53090 1270 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10032830 [exp] 213 / 5e-56 AT1G55860 1189 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10002605 [exp] 213 / 6e-56 AT1G55860 1128 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10032589 [exp] 207 / 6e-54 AT1G55860 4402 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10019908 [exp] 127 / 3e-29 AT4G38600 1545 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Lus10027841 [exp] 123 / 5e-28 AT4G38600 2482 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Lus10005068 [exp] 107 / 3e-23 AT4G38600 2305 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0552 [poplar] [flax] Hect PF00632 [poplar] [flax] HECT HECT-domain (ubiquitin-transferase)
Representative CDS sequence Show only first row Show all	>Potri.010G150000.2 pacid=42798055 polypeptide=Potri.010G150000.2.p locus=Potri.010G150000 ID=Potri.010G150000.2.v4.1 annot-version=v4.1 ATGTTTTTCAACGGCGATCCATCGACACGGAAGCGAGTGGATTTAGGAGGTCGGAGTTCGAAGGAAAGAGATAGGCAGAAGCTTCTTGAACAAACTAGAT TGGAACGGAATCGTAGGTTGTGGGTGAAGCAACAGAATGCTGCTGCTCTCAAAATTCAAAAATGGTTTAGAGGGAGAAAGGCAGTGGAGGCTGAACAGTC TACGGTTCGAGAGCAGTTCTTTGGAACCTATGGGAAGTATTGCCAAAATGTAGACAGGCATTGTTTCAGTCCAGATTCAGAGTTCCTCCGGCAGCTGTTA TTTTTCTTCAATGCACAAAATAGTGATGATTTCACTATCCTTGTGGAGACTTGCCGATTGCTTCTGCAAAATGTTCGAGATAGTGGGGACATTGTGAGCC TATTTGCTGGTGTGGACTATTCAACCAAGCATGGTTTGGTGGACTATAGGGTCAAGCAACTTGCATTTACCTGTATTTGGGCTATCTATCAAAATAGAAA ACAATTGAAGGATCAACTTGTGATGGTGCCCAGGGATTCAAGCCTAACAGCAACTCTCTTGCTGGAAGCTGTAGTTTTGCTGATCGATCCCAAACTTCCA TGGGCTTGCAAGGTTGTTGGTTATCTCTTGCAAAGGAATGCATTCGCTCTATTTAGAGAAATTGTCCTAACAGGAAAGGAGAATACGAAGAGTGACAATT CCATTAGAAATGCATCTCCATTGGAGCGTATTCTTGCCCTTTTGATATCTCACATTGGTCAGCATCCGTGTATTTGCCCCAACATTAATCCGCAATGGAG TTTCTCTTCTCAGATGCTGACAATCCCTTTATTATGGAGACTTTTTCCTAGTTTAAAAGAGGTTTTTGCAACTCGGGGGCTGAGCCAACATTACATTCAT CAGATGGCACAATGTGTGCGGAATGCCTATGTCCTGCCCAATGATGTTTCTGTGGAATGTCCTGGTTATGCCTGTCTCCTAGGAAATACGGTAGAAACTG CAGGAGCTGCTTTGTCTCATGCTGACTGTTCCTTTGAGATGGCTATGGACCTTGCTGCTGTTACAACATTCTTGTTGGAGGCACTTCCTCCTATAAAATC GTCAAGTCCGGAAATTAGACAAAGTTCCACTATGGATGAGGATGATATGGCTTTGCCTGATGAAATGGAAATAGTTTTAAACAAGGATTTGGAACAACAG ATAGCCCATGCTATGCATTCCCGCTTTCTCTTGCAATTGACAAGTGTTTTATTTCGGGAGGTTTCAATGGTCAGTGGTTCAAACCATGGACTGGATGACA AAGAGGTTGCAGCTATTGGTGCTGTTTGTGCCTTTTTGCATGTTGCTTTCAACACCTTGCCAGTCGACCGAATGATGACTGTATTGGCATTTAGAACTGA ACTTGTTCGAGTGCTTTGGAATTTTATGAAGCAGTGTCATGAGAATAAGAAGTGGCCATCCTTGCCTGAGCAGTTGTCATATCTGCCAGGAGATGTACCT GGCTGGCTGTTACCTCTGGCTGTTTTTTGTCCTGTATACAAGTACATGCTTATGTTAGTTGGCAATGAGGAGTTTTATGAGCAGGAGAAGCCATTGTCAT TGAAGGATGTTCGGTGTCTAATTGTTATTTTGAGACAGGCCCTATGGCAGCTCCTGTGGGTGAATCCTACAGCACACAGTAATTCAGTTAAACTTGTTAA AAACACTTCTGCTTATAACGGGAACCCTGTTGAATCTATTAAACAGAGAGTTAGTCTTGTAGCCTCTGAACTCCTCTCTCAGTTGCAAGATTGGAATAAC AGACGACAATTTGCACCACCCAGCGATTTCCATGCTGATGGCGTTGATGATTCATTCATTTCTCAGGCTATAATAGATGGAACCAAGGCAAATGACATTA TGAATCGGGCTCCTTTTTTGGTACCTTTTACAAGCAGAGTAAAAATATTCAATTCACAATTATTGGCCATTAGGCAAAGACAAGGATCCCATGGTGTTTT CACGAGAAACAGATTCAGAATACGACGGGACCATATTTTGGAAGATGCTTATAATCAGATGAGTGCATTGTCTGAGGAGGATCTTCGAGGATTGATTCGT GTATCATTTATTAATGAGTTTGGAGTTGAGGAAGCTGGCATTGATGGTGGTGGCATTTTTAAAGATTTCATGGAGAACATTACTCGAGCTGCCTTTGATG TGCAATACGGGTTGTTTAAGGAAACATCTGATCACCTACTCTACCCCAATCCTGGATCAGGAATGACACATGAACAACATCTCCAGTTTTTTCATTTCCT TGGAACTCTTCTTGCAAAGGCTATGTTCGAAGGTATTCTTGTTGATATACCTTTTGCAACATTCTTCCTAAGCAAATTAAAACAGAAGTACAACTATTTG AATGACTTGCCTTCACTGGATCCAGAATTATATCGCCACCTTATTTTCCTGAAGCGTTATCAAGGTGATATTTCTGACTTGGAGCTCTACTTTGTCATTG TAAATAATGAATATGGCGAGCAAACAGAAGAAGAGCTGCTTCCTGGGGGACGAAACCAACGTGTTACTAATGACAATGTCATTCCTTTTACTCATCTTGT ATCTAATTATCGTCTGAATTATCAGATACGTTTGCAAAGTTCTCATTTCATGAGGGGCTTTCAGCAGCTTATAAAGAAAGAATGGATTGATATGTTTAAC GAGCATGAACTTCAGCTCCTGATATCAGGTTCACTTGACAGCTTGGATATTGATGACCTGCGCAGTCATACCAATTATGCGGGTGGTTATCATAGCGAGC ATTATGTTATTGAGATGTTCTGGGAAGTTATGAAAGGTTTTTCATTGGAAAACCAAAAGAAATTTCTGAAGTTTGTGACCGGTTGCTCTCGAGGACCTTT GCTTGGATTCAAGTATCTGGAACCCTTGTTTTGTATACAGAGGGCCGGGGGTACTGCTTCTGAGGAAGCTCTTGACCGGTTGCCGACATCAGCTACTTGC ATGAATCTTCTAAAGCTTCCACCTTATAGAAGCAAAGAGCAGCTAGCAACGAAATTGCTATATTCTATAAATGCGGATGCTGGTTTCGATTTGAGCTGA
AA sequence Show only first row Show all	>Potri.010G150000.2 pacid=42798055 polypeptide=Potri.010G150000.2.p locus=Potri.010G150000 ID=Potri.010G150000.2.v4.1 annot-version=v4.1 MFFNGDPSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLWVKQQNAAALKIQKWFRGRKAVEAEQSTVREQFFGTYGKYCQNVDRHCFSPDSEFLRQLL FFFNAQNSDDFTILVETCRLLLQNVRDSGDIVSLFAGVDYSTKHGLVDYRVKQLAFTCIWAIYQNRKQLKDQLVMVPRDSSLTATLLLEAVVLLIDPKLP WACKVVGYLLQRNAFALFREIVLTGKENTKSDNSIRNASPLERILALLISHIGQHPCICPNINPQWSFSSQMLTIPLLWRLFPSLKEVFATRGLSQHYIH QMAQCVRNAYVLPNDVSVECPGYACLLGNTVETAGAALSHADCSFEMAMDLAAVTTFLLEALPPIKSSSPEIRQSSTMDEDDMALPDEMEIVLNKDLEQQ IAHAMHSRFLLQLTSVLFREVSMVSGSNHGLDDKEVAAIGAVCAFLHVAFNTLPVDRMMTVLAFRTELVRVLWNFMKQCHENKKWPSLPEQLSYLPGDVP GWLLPLAVFCPVYKYMLMLVGNEEFYEQEKPLSLKDVRCLIVILRQALWQLLWVNPTAHSNSVKLVKNTSAYNGNPVESIKQRVSLVASELLSQLQDWNN RRQFAPPSDFHADGVDDSFISQAIIDGTKANDIMNRAPFLVPFTSRVKIFNSQLLAIRQRQGSHGVFTRNRFRIRRDHILEDAYNQMSALSEEDLRGLIR VSFINEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMTHEQHLQFFHFLGTLLAKAMFEGILVDIPFATFFLSKLKQKYNYL NDLPSLDPELYRHLIFLKRYQGDISDLELYFVIVNNEYGEQTEEELLPGGRNQRVTNDNVIPFTHLVSNYRLNYQIRLQSSHFMRGFQQLIKKEWIDMFN EHELQLLISGSLDSLDIDDLRSHTNYAGGYHSEHYVIEMFWEVMKGFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAGGTASEEALDRLPTSATC MNLLKLPPYRSKEQLATKLLYSINADAGFDLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Potri.010G150000 [exp]	0	1
AT2G35050			Protein kinase superfamily pro...		Potri.001G123500 [exp]	1.41	0.8928
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Potri.001G199200 [exp]	4.35	0.8977	MYA1.1
AT5G44750		ATREV1, REV1	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.009G094400 [exp]	6.92	0.8804
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Potri.016G132000 [exp]	8.83	0.8395
AT5G27030		TPR3	TOPLESS-related 3 (.1.2)		Potri.005G021700 [exp]	14.42	0.8575
AT3G21290			dentin sialophosphoprotein-rel...		Potri.003G033100 [exp]	15.65	0.8675
AT3G09100			mRNA capping enzyme family pro...		Potri.006G096000 [exp]	17.60	0.8567
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Potri.006G085700 [exp]	17.94	0.8455
AT4G30200		VEL1, VIL2	VIN3-Like 2, vernalization5/VI...		Potri.006G167800 [exp]	18.22	0.7824
AT3G52250	MYB		Duplicated homeodomain-like su...		Potri.008G041900 [exp]	20.83	0.8634

Compare expression of checked genes

Potri.010G150000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.