Plant FIBer expression Database

Potri.010G150750 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G150750.2 pacid=42798528 polypeptide=Potri.010G150750.2.p locus=Potri.010G150750 ID=Potri.010G150750.2.v4.1 annot-version=v4.1
ATGATTTCACAGGATCAAAACAAGCTCTTTTCTGATTTTATTTGCCTACGCAAGGAGATTTCTACTGAATTGCCGATTCCTTTTTTTCCCTTCTCCAACA
TTGCACAAGAACAAATCCTATACAAACCCTTGGCAAAATCCTCAATAACCCCAACCAAATCATGGAATGGGTCCAGAGTTGAAGCCAATACCAATTCCGA
AAACTTGCTAGGATTACAGGTTCGAAATCGTATCAATAACGGGACCATCCGCCCCTCCTCCTTCCCCTTCGTCGGAGAACACCATGTTAAGCTCCAACAT
GTCTCCCCTGACATTTGCTCCCTCGCAGCTGAGGATTTGATGATGATGACTTCACCTACACATCGATCACAGAAATGCAAATGGGCCAAACTACGTATTA
CGTTTTTTTTCTTCTTCTATAAATTACAATTTTCTATCCTGTACGATCAACCCAGATCTTGA
AA sequence
>Potri.010G150750.2 pacid=42798528 polypeptide=Potri.010G150750.2.p locus=Potri.010G150750 ID=Potri.010G150750.2.v4.1 annot-version=v4.1
MISQDQNKLFSDFICLRKEISTELPIPFFPFSNIAQEQILYKPLAKSSITPTKSWNGSRVEANTNSENLLGLQVRNRINNGTIRPSSFPFVGEHHVKLQH
VSPDICSLAAEDLMMMTSPTHRSQKCKWAKLRITFFFFFYKLQFSILYDQPRS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G150750
[exp]
0 1
AT1G19180 ZIM TIFY10A, JAZ1 jasmonate-zim-domain protein 1... Potri.001G166200
[exp]
1.00 0.9755
AT2G01670 ATNUDT17 nudix hydrolase homolog 17 (.1... Potri.008G134000
[exp]
2.00 0.9605
AT4G20970 bHLH bHLH162 basic helix-loop-helix (bHLH) ... Potri.013G129800
[exp]
2.44 0.9659
AT5G13220 ZIM JAS1, TIFY9, JA... TIFY DOMAIN PROTEIN 9, JASMONA... Potri.003G165000
[exp]
2.82 0.9696
Potri.010G078950
[exp]
6.32 0.9532
AT1G30135 ZIM TIFY5A, JAZ8 jasmonate-zim-domain protein 8... Potri.011G083900
[exp]
6.92 0.9451
AT2G45760 BAL, BAP2 BON ASSOCIATION PROTEIN 1-LIKE... Potri.002G155300
[exp]
8.36 0.9429 BAP2.1
AT2G44840 AP2_ERF ATERF13, EREBP ethylene-responsive element bi... Potri.014G046900
[exp]
8.94 0.9449 ERF11,Pt-EREBP1.3
AT4G23030 MATE efflux family protein (.1... Potri.003G121400
[exp]
9.38 0.8971
AT1G22810 AP2_ERF Integrase-type DNA-binding sup... Potri.013G100300
[exp]
9.79 0.9133

Potri.010G150750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.