Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17210 146 / 8e-47 ATHS1 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) AT5G22580 88 / 8e-24 Stress responsive A/B Barrel Domain (.1) AT2G31670 39 / 0.0001 Stress responsive alpha-beta barrel domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G151000 [exp] 179 / 4e-60 AT3G17210 134 / 3e-42 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G037500 [exp] 154 / 4e-50 AT3G17210 170 / 2e-56 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G037200 [exp] 153 / 5e-49 AT3G17210 169 / 4e-55 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G151200 [exp] 96 / 4e-27 AT3G17210 92 / 1e-25 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G150500 [exp] 94 / 5e-26 AT3G17210 100 / 5e-29 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G150800 [exp] 86 / 3e-23 AT3G17210 92 / 1e-25 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G150700 [exp] 82 / 2e-21 AT3G17210 86 / 4e-23 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.004G187500 [exp] 81 / 5e-21 AT5G22580 134 / 3e-42 Stress responsive A/B Barrel Domain (.1) Potri.009G148100 [exp] 81 / 8e-21 AT5G22580 118 / 7e-36 Stress responsive A/B Barrel Domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037823 [exp] 142 / 3e-45 AT3G17210 170 / 1e-56 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Lus10000094 [exp] 133 / 1e-41 AT3G17210 162 / 6e-53 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Lus10020555 [exp] 73 / 8e-18 AT5G22580 133 / 9e-42 Stress responsive A/B Barrel Domain (.1) Lus10009407 [exp] 65 / 1e-14 AT5G22580 122 / 2e-37 Stress responsive A/B Barrel Domain (.1) Lus10017101 [exp] 52 / 5e-09 AT5G30490 189 / 2e-59 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0032 [poplar] [flax] Dim_A_B_barrel PF07876 [poplar] [flax] Dabb Stress responsive A/B Barrel Domain
Representative CDS sequence Show only first row Show all	>Potri.010G150900.1 pacid=42800008 polypeptide=Potri.010G150900.1.p locus=Potri.010G150900 ID=Potri.010G150900.1.v4.1 annot-version=v4.1 ATGGAGCAAGTGAAGGGAGTGGTAAAGCACATAGTCCTGGCCAAGTTCAAAGAAGGAGTGACCGAAGAAGAAATTGAGAAACACATAAAAGACTACGCCA ATCTGCTCAACCACATCGAACACATGAAGTCTTTCCACTGGGGGACAGACGTGAGCATCGAGAACCTTCATCAAGGTTTCACTCATATCTTTGAGATTAC TTTTGAGACATTAGATGGCCGATCAGCGTATGTAGCTCATCCTGCTCATGTTGATTTTGGCACTGCTTTCTTGACTATCTTGGAGAAAATCGTCGTGGTC GATTTCGTGCCCACGCTCGTTAAACTCTAA
AA sequence Show only first row Show all	>Potri.010G150900.1 pacid=42800008 polypeptide=Potri.010G150900.1.p locus=Potri.010G150900 ID=Potri.010G150900.1.v4.1 annot-version=v4.1 MEQVKGVVKHIVLAKFKEGVTEEEIEKHIKDYANLLNHIEHMKSFHWGTDVSIENLHQGFTHIFEITFETLDGRSAYVAHPAHVDFGTAFLTILEKIVVV DFVPTLVKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Potri.010G150900 [exp]	0	1
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Potri.010G150500 [exp]	5.65	0.9664	SP1.3
AT5G20740			Plant invertase/pectin methyle...		Potri.006G137800 [exp]	10.95	0.9654
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Potri.011G093500 [exp]	11.83	0.9285
AT1G56170	CCAAT	NF-YC2, ATHAP5B...	"nuclear factor Y, subunit C2"...		Potri.017G120000 [exp]	12.96	0.9639
AT5G33370			GDSL-like Lipase/Acylhydrolase...		Potri.019G024700 [exp]	15.49	0.9638
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.001G167800 [exp]	17.02	0.9348
AT4G24340			Phosphorylase superfamily prot...		Potri.013G081233 [exp]	17.32	0.9638
AT1G65880		BZO1	benzoyloxyglucosinolate 1 (.1)		Potri.017G138451 [exp]	18.16	0.9637
AT4G14380			unknown protein		Potri.008G167200 [exp]	20.04	0.9299
AT4G24340			Phosphorylase superfamily prot...		Potri.013G082800 [exp]	22.27	0.9636

Compare expression of checked genes

Potri.010G150900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.