Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17210 134 / 4e-42 ATHS1 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) AT5G22580 82 / 2e-21 Stress responsive A/B Barrel Domain (.1) AT2G31670 46 / 8e-07 Stress responsive alpha-beta barrel domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G150900 [exp] 179 / 4e-60 AT3G17210 146 / 8e-47 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G037500 [exp] 152 / 3e-49 AT3G17210 170 / 2e-56 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G037200 [exp] 151 / 2e-48 AT3G17210 169 / 4e-55 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G151200 [exp] 98 / 6e-28 AT3G17210 92 / 1e-25 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G150500 [exp] 92 / 2e-25 AT3G17210 100 / 5e-29 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G150800 [exp] 87 / 2e-23 AT3G17210 92 / 1e-25 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.004G187500 [exp] 78 / 5e-20 AT5G22580 134 / 3e-42 Stress responsive A/B Barrel Domain (.1) Potri.010G150700 [exp] 77 / 1e-19 AT3G17210 86 / 4e-23 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.009G148100 [exp] 74 / 2e-18 AT5G22580 118 / 7e-36 Stress responsive A/B Barrel Domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037823 [exp] 135 / 1e-42 AT3G17210 170 / 1e-56 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Lus10000094 [exp] 127 / 3e-39 AT3G17210 162 / 6e-53 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Lus10020555 [exp] 69 / 2e-16 AT5G22580 133 / 9e-42 Stress responsive A/B Barrel Domain (.1) Lus10009407 [exp] 63 / 3e-14 AT5G22580 122 / 2e-37 Stress responsive A/B Barrel Domain (.1) Lus10017101 [exp] 52 / 4e-09 AT5G30490 189 / 2e-59 unknown protein Lus10017873 [exp] 41 / 4e-05 AT2G31670 258 / 4e-87 Stress responsive alpha-beta barrel domain protein (.1) Lus10034659 [exp] 39 / 0.0003 AT2G31670 264 / 2e-89 Stress responsive alpha-beta barrel domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0032 [poplar] [flax] Dim_A_B_barrel PF07876 [poplar] [flax] Dabb Stress responsive A/B Barrel Domain
Representative CDS sequence Show only first row Show all	>Potri.010G151000.1 pacid=42797764 polypeptide=Potri.010G151000.1.p locus=Potri.010G151000 ID=Potri.010G151000.1.v4.1 annot-version=v4.1 ATGGAGGGAGGAAAAGGGGTGGTGAAGCACATAGTCCTGGCCAAGTTCAAAGAAGGAACCACAGAGGAAGAAATTGAGAAACATATAAAGAACTATGCCG ATCTCCTCAACCATATCGAGCACATGAAGTCTTTCGAGTGGGGGACGGACGTGAGCATTGAGAACCTTCATCAAGGTTTCACTCATATCTTTGAGGCTAC TTTTGAGACATTAGAGGGCCGATCAGCATATGTAGCTCATCCTGCTCATGTTAAATTTGGCACAGCTTTGTTTCCTACCTTGGAGAAAGTCATTGTGTTC GACTACGTCCCCAAAGCTTAA
AA sequence Show only first row Show all	>Potri.010G151000.1 pacid=42797764 polypeptide=Potri.010G151000.1.p locus=Potri.010G151000 ID=Potri.010G151000.1.v4.1 annot-version=v4.1 MEGGKGVVKHIVLAKFKEGTTEEEIEKHIKNYADLLNHIEHMKSFEWGTDVSIENLHQGFTHIFEATFETLEGRSAYVAHPAHVKFGTALFPTLEKVIVF DYVPKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Potri.010G151000 [exp]	0	1
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Potri.006G110100 [exp]	2.00	0.9107
AT1G22160			Protein of unknown function (D...		Potri.005G168900 [exp]	2.44	0.9220
AT2G17710			unknown protein		Potri.005G107800 [exp]	7.41	0.8941
AT5G65880			unknown protein		Potri.007G006700 [exp]	8.60	0.8601
AT5G42850			Thioredoxin superfamily protei...		Potri.001G225500 [exp]	9.48	0.8635
AT5G43060			Granulin repeat cysteine prote...		Potri.007G047600 [exp]	10.48	0.9238
AT5G28750			Bacterial sec-independent tran...		Potri.005G053400 [exp]	12.24	0.8894
					Potri.004G212550 [exp]	14.14	0.8838
					Potri.008G005500 [exp]	14.49	0.8759
AT3G26590			MATE efflux family protein (.1...		Potri.019G063500 [exp]	15.87	0.8840

Compare expression of checked genes

Potri.010G151000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.