Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	LPD2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17240 817 / 0 mtLPD2, LPD2 lipoamide dehydrogenase 2 (.1.2.3) AT1G48030 813 / 0 mtLPD1 mitochondrial lipoamide dehydrogenase 1 (.1.2) AT3G16950 223 / 4e-66 PTLPD1, LPD1 lipoamide dehydrogenase 1 (.1.2) AT4G16155 222 / 3e-65 dihydrolipoyl dehydrogenases (.1) AT3G24170 140 / 4e-36 ATGR1 glutathione-disulfide reductase (.1.2.3) AT3G54660 129 / 4e-32 ATGR2, EMB2360, GR glutathione reductase (.1) AT5G03630 58 / 8e-09 ATMDAR2 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) AT1G63940 50 / 2e-06 MDAR6 monodehydroascorbate reductase 6 (.1.2.3.4) AT3G09940 50 / 3e-06 MDAR2, ATMDAR3, MDHAR MONODEHYDROASCORBATE REDUCTASE 2, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, monodehydroascorbate reductase (.1.2) AT3G52880 50 / 3e-06 ATMDAR1 monodehydroascorbate reductase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G100800 [exp] 884 / 0 AT3G17240 868 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.010G142100 [exp] 223 / 3e-66 AT3G16950 895 / 0.0 lipoamide dehydrogenase 1 (.1.2) Potri.008G107600 [exp] 219 / 1e-64 AT3G16950 877 / 0.0 lipoamide dehydrogenase 1 (.1.2) Potri.001G050000 [exp] 141 / 1e-36 AT3G24170 857 / 0.0 glutathione-disulfide reductase (.1.2.3) Potri.003G178200 [exp] 140 / 2e-36 AT3G24170 848 / 0.0 glutathione-disulfide reductase (.1.2.3) Potri.015G037800 [exp] 122 / 1e-29 AT3G54660 872 / 0.0 glutathione reductase (.1) Potri.006G114800 [exp] 56 / 4e-08 AT3G52880 708 / 0.0 monodehydroascorbate reductase 1 (.1.2) Potri.001G099600 [exp] 54 / 1e-07 AT1G63940 793 / 0.0 monodehydroascorbate reductase 6 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017102 [exp] 841 / 0 AT1G48030 918 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10037825 [exp] 837 / 0 AT1G48030 922 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10032649 [exp] 825 / 0 AT1G48030 892 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10043103 [exp] 819 / 0 AT1G48030 889 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10037741 [exp] 220 / 6e-65 AT3G16950 928 / 0.0 lipoamide dehydrogenase 1 (.1.2) Lus10016877 [exp] 219 / 2e-64 AT3G16950 920 / 0.0 lipoamide dehydrogenase 1 (.1.2) Lus10011734 [exp] 149 / 2e-39 AT3G24170 863 / 0.0 glutathione-disulfide reductase (.1.2.3) Lus10018770 [exp] 130 / 3e-32 AT3G54660 879 / 0.0 glutathione reductase (.1) Lus10000758 [exp] 115 / 1e-27 AT3G24170 776 / 0.0 glutathione-disulfide reductase (.1.2.3) Lus10024857 [exp] 110 / 1e-25 AT3G54660 864 / 0.0 glutathione reductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00070 [poplar] [flax] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase CL0063 [poplar] [flax] NADP_Rossmann PF01134 [poplar] [flax] GIDA Glucose inhibited division protein A CL0608 [poplar] [flax] Reductase_C PF02852 [poplar] [flax] Pyr_redox_dim Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.010G151400.1 pacid=42798798 polypeptide=Potri.010G151402.1.p locus=Potri.010G151400 ID=Potri.010G151400.1.v4.1 annot-version=v4.1 ATGGCGATGGCAGGTATTGCAAAGAGAAAGGCATACTTTTTAACAAGAAACTTATCAAATTCTCCAAGTGCTGATGCTTTCAAGTTGTCTTATTCACTCA CAAAATTCTCTCGTGGGTTTGCTACCTCAGGATCTGAAGAGAACGATGTGGTTGTCATCGGTGGTGGACCAGGTGGCTATGTGGCTGCTATTAAAGCTGC CCAGCTGGGTCTTAAGACTACTTGTATTGAAAAACGCGGTACTCTTGGCGGTACTTGTCTTAATGTTGGTTGTATCCCTTCAAAGGCTCTTCTTCACTCA TCACACATGTTCCATGAAGCCCAACATTCATTTGCTAGCCATGGAGTGAAGTTTTCTTCTGTTGAGGTTGATTTACCTGCCATGATGGCCCAAAAAGACA AAGCCGTATCTACCCTTACTCGAGGTATTGAAGGTTTATTCAAGAAGAACAAAGTCAACTATGTCAAAGGGTATGGCAAGTTCTTATCCCCATACGAGGT GTCAGTGGACACCATTGATGGTGGGAACACTGTTGTGAAAGGTAAGAATATCATAATTGCCACGGGTTCTGATGTCAAGTCTCTACCTGGGATTATCATT GATGAAGAGAAAATTGTATCTTCTACTGGTGCTTTGGCTTTGCAGCAGATTCCAAAGAAACTTGTGGTCATTGGGGCAGGCTATATTGGACTTGAGATGG GCTCAGTGTGGGCCCGGCTTGGTTCAGAAGTCACTGTCGTTGAGTTTGCTCCAGATATTGTCCCAAGCATGGATGGGGAAAAGCAGAAGATGAAATTCAT GCTCACAACTAAGGTTGTAGGAGTTGATACTTCTGGAAATGGTGTGAAGTTGACAGTTGAACCGGCATCTGGTGGTGACCAGACAACTCTTGAAGCTGAT GTGGTTCTTGTCTCTGCTGGTAGGACTCCATTCACTGCTGGACTTGGGCTGGACAGGATTGGTGTGGAGACTGACAAGGGTGGTCGAATTTTAGTCAATG AAAGGTTTGCAACAAATGTTTCCAGTGTCTATCCTATTGGGGATGTGATTCCTGGCCCAATGTTAGCACACAAGGCAGAAGAGGATGGAGTTGCTTGTGT AGAATTCATAGCAGGCAAGCACGGCCATGTCGACTATGATAAGGTTGCATCTGTTGGTAAAACTGAAGAGCAGGTTAAGGCACTTGGTGTTGAGTACCGT GTTGGGAAGTTCCCTTTCTTGGCAAACAGTCGTGCCAAGGCGATTGATGATGCTGAAGGGTTAGTCAAGATAATTGCAGAGAACGAGACAGACAAAATAT TGGGAGTCCATATCATGGCTCCGAATGCTGGAGAGCTCATTCATGAGGCAGTGCTGGCTCTTGCTTATGATGCTACTAGCGAGGACATATCACGTGTATG CCACGCACATCCAACAATGAGTGAGGCATTGAAGGAAGCTGCCATGGCTACTCATGACAAGCCCATTCACATCTAA
AA sequence Show only first row Show all	>Potri.010G151400.1 pacid=42798798 polypeptide=Potri.010G151402.1.p locus=Potri.010G151400 ID=Potri.010G151400.1.v4.1 annot-version=v4.1 MAMAGIAKRKAYFLTRNLSNSPSADAFKLSYSLTKFSRGFATSGSEENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGTLGGTCLNVGCIPSKALLHS SHMFHEAQHSFASHGVKFSSVEVDLPAMMAQKDKAVSTLTRGIEGLFKKNKVNYVKGYGKFLSPYEVSVDTIDGGNTVVKGKNIIIATGSDVKSLPGIII DEEKIVSSTGALALQQIPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAPDIVPSMDGEKQKMKFMLTTKVVGVDTSGNGVKLTVEPASGGDQTTLEAD VVLVSAGRTPFTAGLGLDRIGVETDKGGRILVNERFATNVSSVYPIGDVIPGPMLAHKAEEDGVACVEFIAGKHGHVDYDKVASVGKTEEQVKALGVEYR VGKFPFLANSRAKAIDDAEGLVKIIAENETDKILGVHIMAPNAGELIHEAVLALAYDATSEDISRVCHAHPTMSEALKEAAMATHDKPIHI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17240		mtLPD2, LPD2	lipoamide dehydrogenase 2 (.1....		Potri.010G151400 [exp]	0	1	LPD2
AT2G26730			Leucine-rich repeat protein ki...		Potri.018G074300 [exp]	7.87	0.8635
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Potri.006G131100 [exp]	8.48	0.8926
AT3G58810		ATMTPA2, MTP3, ...	ARABIDOPSIS METAL TOLERANCE PR...		Potri.011G150600 [exp]	11.74	0.8546	PtrMTP3.2
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Potri.010G145832 [exp]	12.48	0.9067
AT3G53380			Concanavalin A-like lectin pro...		Potri.016G087800 [exp]	16.24	0.8473
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Potri.018G053680 [exp]	16.73	0.8451
AT4G22190			unknown protein		Potri.006G283300 [exp]	18.24	0.8906
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Potri.017G136950 [exp]	19.28	0.8853
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Potri.010G071000 [exp]	21.44	0.9054
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Potri.018G053640 [exp]	22.78	0.8227

Compare expression of checked genes

Potri.010G151400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.