Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06440 702 / 0 Galactosyltransferase family protein (.1.2) AT1G26810 567 / 0 GALT1 galactosyltransferase1 (.1) AT5G62620 350 / 1e-111 Galactosyltransferase family protein (.1.2) AT1G27120 348 / 6e-111 Galactosyltransferase family protein (.1) AT1G74800 345 / 2e-109 Galactosyltransferase family protein (.1) AT4G21060 332 / 9e-105 Galactosyltransferase family protein (.1.2) AT2G26100 79 / 1e-15 Galactosyltransferase family protein (.1) AT3G14960 79 / 1e-15 Galactosyltransferase family protein (.1) AT1G53290 76 / 1e-14 Galactosyltransferase family protein (.1) AT1G22015 62 / 5e-10 DD46 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G168500 [exp] 586 / 0 AT1G26810 857 / 0.0 galactosyltransferase1 (.1) Potri.008G086900 [exp] 580 / 0 AT1G26810 829 / 0.0 galactosyltransferase1 (.1) Potri.015G067600 [exp] 357 / 4e-114 AT5G62620 920 / 0.0 Galactosyltransferase family protein (.1.2) Potri.012G072400 [exp] 341 / 1e-107 AT5G62620 905 / 0.0 Galactosyltransferase family protein (.1.2) Potri.006G011300 [exp] 337 / 2e-106 AT4G21060 1005 / 0.0 Galactosyltransferase family protein (.1.2) Potri.016G013300 [exp] 333 / 5e-105 AT4G21060 1000 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G040400 [exp] 315 / 2e-98 AT5G62620 858 / 0.0 Galactosyltransferase family protein (.1.2) Potri.006G228900 [exp] 83 / 5e-17 AT2G26100 452 / 1e-159 Galactosyltransferase family protein (.1) Potri.001G392700 [exp] 76 / 2e-14 AT1G53290 452 / 3e-160 Galactosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032650 [exp] 900 / 0 AT3G06440 659 / 0.0 Galactosyltransferase family protein (.1.2) Lus10043102 [exp] 791 / 0 AT3G06440 575 / 0.0 Galactosyltransferase family protein (.1.2) Lus10036756 [exp] 582 / 0 AT1G26810 831 / 0.0 galactosyltransferase1 (.1) Lus10012822 [exp] 578 / 0 AT1G26810 828 / 0.0 galactosyltransferase1 (.1) Lus10037171 [exp] 571 / 0 AT1G26810 764 / 0.0 galactosyltransferase1 (.1) Lus10030467 [exp] 558 / 0 AT1G26810 780 / 0.0 galactosyltransferase1 (.1) Lus10004256 [exp] 348 / 1e-110 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10036154 [exp] 340 / 2e-107 AT4G21060 963 / 0.0 Galactosyltransferase family protein (.1.2) Lus10042164 [exp] 339 / 3e-107 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10037238 [exp] 322 / 8e-101 AT5G62620 881 / 0.0 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00337 [poplar] [flax] Gal-bind_lectin Galactoside-binding lectin CL0110 [poplar] [flax] GT-A PF01762 [poplar] [flax] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.010G151600.6 pacid=42800011 polypeptide=Potri.010G151600.6.p locus=Potri.010G151600 ID=Potri.010G151600.6.v4.1 annot-version=v4.1 ATGAAATCATTGAAAATAGCTTTGTCTATGTTCAAAATGAAGAAATGGTCCGGAGGGGTTGTGATCATAGCTCTTGCAATAATTCTGGTTTTCAGTTATA GCCTTATGGGAACTCGGACACAAAAAAAGCAATCATATGATTTTTTCCGAAATCATCCAGCTGGTGATTCTCATTTGAAGGACAACCATCCTGCTAAATC TCCTCAATTGGAACTGAAGAAAGCAACAAAATCATCCAAGAAGCCACATTATATAAATGTTGAAGGGCTTAGTGATTTGTATGCTCAAAACAATATTTCC AAGGATGAATCAAATGCCTTGGTTGTTTGGTTTCAGATGCGTTTGCTGCTGTCAAGGTCTGATGCTTTGCCTGAAACAAATCAGGGGATTAGAGAGGCTT CGATAGCATGGAAGGACTTATTGTCCAAAATCAAGGAAAACAAGGCTGCCCAGCTCTCCAATATTAACAAAACAGAGGATAAGAACTGTCCATACTCTGT AAGCACAATTGATTTGACAACATCAAGTGGTGAAACAATTCTTGATATCCCTTGTGGTCTAGCTGAAGATTCTTCCATTTCAGTACTTGGCATTCCAGAT GGGCACAGCAGAAGCTTTCAGATTCAACTTCTAGGGTCTCAACTTCCAGTGGAGTCAAACCCTCCTATTATCTTGCAGTACAATGTGAGCCTACCAGGAG ACAATATGACAGAGGAGCCATTTGTTGTGCAGAATACATGGACTAAAGAATATGGCTGGGGAAAAGAAGAAAGATGTCCTAGTCATAGATCTGTTAACAT CCCAAAAGTTGATGGACTTGTGCTTTGCAATGAAAAAGTTGTCAGAAGCACCATGGAAGAAAATGGAAATGCCAGCTCTGTTGGTGATGTATCAGCCAAT GTTTCCCAAGGAATTGCCCATGAAAGAGCTAATTTCCCATTTGTTGAAGGAAATGCTTTCACTGCTACATTATGGGTTGGTTTGGAGGGATTCCATATGA CAGTAAATGGAAGGCATGAAACATCTTTTGTGTACAGGGAGAAACTTGAACCATGGTTAGTGAGCGGGGTCAAAGTGACTGGTGGTGTGGACATTTTATC TGCCTTGGCAAGAGGGTTGCCTGTACCTGAAGATAATGACTTAGTGGTGGATGTTGAGCACCTGAAAGCTCCACTGGTAACAAGAAAGAGACTTGTAATG TTGATTGGGATTTTCTCCACTGGAAATAATTTCGAGCGTCGCATGGCACTGAGGAGGTCTTGGATGCAATATGAGGCTGCACGCTCAGGGGATGTAGCTG TGCGATTTTTCATTGGCCTGCACAAGAACAGTCAAGTCAATCTTGAGCTGTGGAAAGAAGCCCTGGTATATGGAGATATCCAATTGATGCCTTTCGTCGA TTATTACAGCCTGATAAGTTTGAAAACAATTGCAATCTGCATTATGGGAACCAAAATTCTCCCTGCTAAATACATAATGAAAACAGACGACGATGCTTTT GTTAGGATTGATCAAGTACTCACAAGCCTCAAGGAAAAGCCATCAAATGGTCTCTTGTATGGTCGCATATCCCTTGATTCATCGCCTCACAGGGATAGAG ACAGCAAATGGTATATCAGCAACGAGGAATGGCCACATGATGCATATCCACCATGGGCTCATGGCCCCGGTTACATTATATCACGGGACATTGCAAAGTT CATTGTCCGAGGCCACCAGGAAAGAGATCTCAAGCTTTTTAAACTAGAAGATGTTGCGATGGGCATATGGATTGAGCAATTCAAGAACAGTGGTCAAGAA GTGCATTACATGACCGATGACAGGTTTTATAATGCTGGATGTGAAACAGATTATATTCTTGCCCATTATCAAAGCCCAAGGTTAGTATTATGTCTTTGGG AGAAGTTGCAGAAGGAGCACCAGCCAGCGTGCTGCGAGTAG
AA sequence Show only first row Show all	>Potri.010G151600.6 pacid=42800011 polypeptide=Potri.010G151600.6.p locus=Potri.010G151600 ID=Potri.010G151600.6.v4.1 annot-version=v4.1 MKSLKIALSMFKMKKWSGGVVIIALAIILVFSYSLMGTRTQKKQSYDFFRNHPAGDSHLKDNHPAKSPQLELKKATKSSKKPHYINVEGLSDLYAQNNIS KDESNALVVWFQMRLLLSRSDALPETNQGIREASIAWKDLLSKIKENKAAQLSNINKTEDKNCPYSVSTIDLTTSSGETILDIPCGLAEDSSISVLGIPD GHSRSFQIQLLGSQLPVESNPPIILQYNVSLPGDNMTEEPFVVQNTWTKEYGWGKEERCPSHRSVNIPKVDGLVLCNEKVVRSTMEENGNASSVGDVSAN VSQGIAHERANFPFVEGNAFTATLWVGLEGFHMTVNGRHETSFVYREKLEPWLVSGVKVTGGVDILSALARGLPVPEDNDLVVDVEHLKAPLVTRKRLVM LIGIFSTGNNFERRMALRRSWMQYEAARSGDVAVRFFIGLHKNSQVNLELWKEALVYGDIQLMPFVDYYSLISLKTIAICIMGTKILPAKYIMKTDDDAF VRIDQVLTSLKEKPSNGLLYGRISLDSSPHRDRDSKWYISNEEWPHDAYPPWAHGPGYIISRDIAKFIVRGHQERDLKLFKLEDVAMGIWIEQFKNSGQE VHYMTDDRFYNAGCETDYILAHYQSPRLVLCLWEKLQKEHQPACCE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06440			Galactosyltransferase family p...		Potri.010G151600 [exp]	0	1
AT1G04910			O-fucosyltransferase family pr...		Potri.017G057300 [exp]	8.30	0.8289
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Potri.011G069600 [exp]	27.56	0.8190
AT5G19610		GNL2	GNOM-like 2 (.1)		Potri.018G075300 [exp]	28.24	0.8271
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Potri.006G053800 [exp]	35.14	0.7589
AT3G57880			Calcium-dependent lipid-bindin...		Potri.004G043000 [exp]	37.45	0.7691
AT1G15240			Phox-associated domain;Phox-li...		Potri.003G053200 [exp]	40.98	0.7888
AT3G56740			Ubiquitin-associated (UBA) pro...		Potri.016G035800 [exp]	56.28	0.7862
AT1G19100			Histidine kinase-, DNA gyrase ...		Potri.012G089000 [exp]	57.38	0.7604
AT2G23790			Protein of unknown function (D...		Potri.007G031400 [exp]	85.85	0.7809
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Potri.011G165100 [exp]	91.07	0.7706

Compare expression of checked genes

Potri.010G151600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.