Plant FIBer expression Database

Potri.010G152200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G17310 529 / 2e-179 DRM3, AtDRM3 domains rearranged methyltransferase 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
AT5G14620 287 / 2e-87 DMT7, DRM2 domains rearranged methyltransferase 2 (.1)
AT5G15380 284 / 4e-86 DRM1 domains rearranged methylase 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G347000
[exp]
295 / 3e-90 AT5G15380 619 / 0.0 domains rearranged methylase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032652
[exp]
665 / 0 AT3G17310 479 / 5e-160 domains rearranged methyltransferase 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Lus10014552
[exp]
282 / 2e-85 AT5G14620 581 / 0.0 domains rearranged methyltransferase 2 (.1)
Lus10032136
[exp]
279 / 1e-84 AT5G14620 580 / 0.0 domains rearranged methyltransferase 2 (.1)
Lus10043099
[exp]
203 / 5e-58 AT3G17310 148 / 9e-39 domains rearranged methyltransferase 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.010G152200.12 pacid=42797654 polypeptide=Potri.010G152200.12.p locus=Potri.010G152200 ID=Potri.010G152200.12.v4.1 annot-version=v4.1
ATGGAGGATCCAAATAGAAGCAGAAGCAGCAGCGATTGGAATAACAACAACAAGAATTTAATAAAGCCAAAGCATGAGAAATTGGATTTTGATTTGGCAT
TTGAGAGTCTGCGGTCAAGGGAAGTTGGGGATAATGTAGCAAGTTCATCTCGAAGCTATTTAAGATCATTTTTTACTGAAATGGGATACTCTCCGTCTCT
TGTCAACAGAGTGATTGAGGAAAATGGTGAAGACAATGTCGACCTGTTATTGGAGATTCTCATGGAATGTTCTGGTCTTCAAAAGCCAAACTCTCAGTCA
TCAGATTCTTTAGATTGCTTGTTTGATGATAGGGGTGAAAGCAGCCCTCCAAAGTATTCCACAGTTACTGGAGTAAAAGAGGAGCCAGATGTGTTTGATG
AAGTTTATGACGACAAAAGGGTGTCCTTGCTGAAGATGAATTTCCCAGCAAAGGAAGTTGAATTGGCAATGGATAAACTTGGTGAGAATGCTCCCATCAA
TGAAATAATTGACTTTATCATTGCTGCCCAGATAGCTAACAATCTTGACAGGGAAACAGAGGACATGCCTGATATTGATGCGGAGAATAAAGAGGATGTC
AATGATGAAACCCTATATGGAACTATGGACAAAACACTCTGTTTGCTTAACATGGGTTTCTCTGAAAATGAAGTTTCTTTGGCTATTGATAAGTTTGGTT
CAGAAGTTCCAGTTACAGAGCTTGCTAATGCAATTTGTGCACATCAACTTGGGGAAACCTATGTTATAAAGAAGAAGTATTCTGAGAATTCCACTGCAAG
CTGCTCGAGTGCTGCAGAGGACAGTAGATCCTTTGGTGTGGAGACAGAAAATAACACAAGACATCACTCTTTCAGTTGGGTGAAGTCAGAAACTGAGGAT
TGTAGACGAGATGCTATTTTGCAGTCAAGAGATATGAACACCAAGGAAACTCGTAAAGGAAAACGGCCAAGACAAGAGCACATTGAAGGCTATCAAGAAG
CTCAGCCTAGGCATGATAGCCTTGAGGAAAATTGTGCAGGTGAACAGCCAAAGCAGGAATATGACTATGGTTCAAGTTCTTATTTTGAACATGAGTGGGT
AGAAGAAAAGGTTAACTCTGACACTACCACATTTGGAATGCCAAAGCCATTCAAATGTAATCCATGCAAGATTCTTGATCAAATTGCTGCTAAACCTCCG
TATTTTTTCTATGGGAATGTTGCAACTGCATCTTCTGACACCTGGGGAAAAATATCTCAGTTCTTATATGGAATCGAGCCTGAATTTGTGGATACTCAGT
TTTTCTCGGCATTGAGTAGGAGGGAAGGTTACATACACAATCTTCCTACTGAAAATAGGTCTCACATCCTTCCAAAGCCACCAATTACCTTGGAAGATCT
GATGCCAAGTACAAAGAAATGGTGGCCATCATGGGATGCAAGGAAGAAGATGAGCTGCAGAAATTTTGATAGTAGTGGGTCGTCTCAGCTCTGTGATATG
CTTGGGAGGATGCTGGATGATTCTCGTGGTTTGCTCTCAGCCGAACAGCAGAGAGACCTCCTTCGTCATTGCCAGGCATTAAATCTAATGTGGGTTGGCC
CAAACAAGCTATCCCCCCTGGAATCAGCTCATTTAGAGAAAATTCTGGGGTATCCATTGAATCACACATTAATTGCAGATTATCCGTTGACAGAAAGGAT
GTACTCACTCAGATATAGCTTCCAGACCGATACTTTGGGGTACCATCTCTCGGTTTTGAAGTCAATTTTCCCACAGGGAATAACAGTGTTGTCACTTTTC
AGTGGGATTGGTGGTGCAGAAATTACTTTACATCGTCTCGGCATTCATTTGAAAGGCGTGGTCTCTGTTGAAACTTCTGAAACAAATCGAAGGGTCTTAA
AGAGGTGGTGGTACAGTAGTGGACAGACTGGACGATTGGAGCAAATAGAAGACATTCGGAAGCTAACAAGCAGTACAGTTGAGAGACTGGTTGAGAATTT
TGTCTGTTTTGACTTCGTAATTTGTCAAAACTCTTTTACTCGGCCATCAAAAATTCCCGGAGTGGGTTCAGGTTTAGAAAGTCAACATTTTTTTGACTTC
ACGTTGTTCAATGAGTTTGTTCGTGTTTTGCAACGTGTAAGGAGTGCAATCGAAAGAAAGAGGTAG
AA sequence
>Potri.010G152200.12 pacid=42797654 polypeptide=Potri.010G152200.12.p locus=Potri.010G152200 ID=Potri.010G152200.12.v4.1 annot-version=v4.1
MEDPNRSRSSSDWNNNNKNLIKPKHEKLDFDLAFESLRSREVGDNVASSSRSYLRSFFTEMGYSPSLVNRVIEENGEDNVDLLLEILMECSGLQKPNSQS
SDSLDCLFDDRGESSPPKYSTVTGVKEEPDVFDEVYDDKRVSLLKMNFPAKEVELAMDKLGENAPINEIIDFIIAAQIANNLDRETEDMPDIDAENKEDV
NDETLYGTMDKTLCLLNMGFSENEVSLAIDKFGSEVPVTELANAICAHQLGETYVIKKKYSENSTASCSSAAEDSRSFGVETENNTRHHSFSWVKSETED
CRRDAILQSRDMNTKETRKGKRPRQEHIEGYQEAQPRHDSLEENCAGEQPKQEYDYGSSSYFEHEWVEEKVNSDTTTFGMPKPFKCNPCKILDQIAAKPP
YFFYGNVATASSDTWGKISQFLYGIEPEFVDTQFFSALSRREGYIHNLPTENRSHILPKPPITLEDLMPSTKKWWPSWDARKKMSCRNFDSSGSSQLCDM
LGRMLDDSRGLLSAEQQRDLLRHCQALNLMWVGPNKLSPLESAHLEKILGYPLNHTLIADYPLTERMYSLRYSFQTDTLGYHLSVLKSIFPQGITVLSLF
SGIGGAEITLHRLGIHLKGVVSVETSETNRRVLKRWWYSSGQTGRLEQIEDIRKLTSSTVERLVENFVCFDFVICQNSFTRPSKIPGVGSGLESQHFFDF
TLFNEFVRVLQRVRSAIERKR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G17310 DRM3, AtDRM3 domains rearranged methyltrans... Potri.010G152200
[exp]
0 1
AT1G05350 NAD(P)-binding Rossmann-fold s... Potri.012G097700
[exp]
1.73 0.9012
AT5G12370 SEC10 exocyst complex component sec1... Potri.002G164100
[exp]
2.44 0.8655
AT4G24740 AME1, AFC2 FUS3-complementing gene 2 (.1.... Potri.010G049100
[exp]
3.16 0.9001
AT1G19485 Transducin/WD40 repeat-like su... Potri.006G036601
[exp]
4.47 0.8683
AT5G47820 FRA1 FRAGILE FIBER 1, P-loop contai... Potri.007G046700
[exp]
5.19 0.8622 Pt-KICP.1
AT3G18990 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE... Potri.014G036800
[exp]
6.24 0.8442
AT5G44800 PKR1, CHR4, MI-... PICKLE RELATED 1, chromatin re... Potri.010G172100
[exp]
7.07 0.8618
AT3G55020 Ypt/Rab-GAP domain of gyp1p su... Potri.010G215000
[exp]
7.07 0.8196
AT3G28430 unknown protein Potri.018G140800
[exp]
7.48 0.8635
AT4G36980 unknown protein Potri.005G138200
[exp]
7.74 0.8745

Potri.010G152200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.