Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48110 572 / 0 ECT7 evolutionarily conserved C-terminal region 7 (.1.2) AT3G17330 498 / 3e-168 ECT6 evolutionarily conserved C-terminal region 6 (.1.2) AT3G13060 312 / 4e-96 ECT5 evolutionarily conserved C-terminal region 5 (.1.2) AT1G79270 288 / 2e-88 ECT8 evolutionarily conserved C-terminal region 8 (.1) AT3G13460 290 / 9e-88 ECT2 evolutionarily conserved C-terminal region 2 (.1.2.3.4) AT5G61020 278 / 7e-85 ECT3 evolutionarily conserved C-terminal region 3 (.1.2) AT1G55500 274 / 1e-82 ECT4 evolutionarily conserved C-terminal region 4 (.1.2.3) AT5G58190 264 / 3e-79 ECT10 evolutionarily conserved C-terminal region 10 (.1.2) AT1G27960 255 / 5e-76 ECT9 evolutionarily conserved C-terminal region 9 (.1) AT3G03950 251 / 8e-76 ECT1 evolutionarily conserved C-terminal region 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G100200 [exp] 1189 / 0 AT1G48110 535 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Potri.008G080800 [exp] 337 / 6e-106 AT1G79270 424 / 2e-142 evolutionarily conserved C-terminal region 8 (.1) Potri.010G175500 [exp] 330 / 2e-103 AT1G79270 418 / 2e-140 evolutionarily conserved C-terminal region 8 (.1) Potri.014G001000 [exp] 318 / 3e-98 AT3G13060 756 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.007G002800 [exp] 306 / 1e-93 AT3G13060 732 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.001G056100 [exp] 290 / 2e-88 AT3G13060 431 / 5e-144 evolutionarily conserved C-terminal region 5 (.1.2) Potri.019G034300 [exp] 284 / 1e-86 AT3G13460 412 / 9e-137 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.006G079900 [exp] 286 / 2e-86 AT5G58190 420 / 1e-140 evolutionarily conserved C-terminal region 10 (.1.2) Potri.003G008400 [exp] 281 / 6e-85 AT1G09810 346 / 3e-113 evolutionarily conserved C-terminal region 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017111 [exp] 787 / 0 AT1G48110 597 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10018343 [exp] 722 / 0 AT1G48110 592 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10034792 [exp] 302 / 2e-92 AT3G13060 646 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10033335 [exp] 301 / 1e-91 AT3G13060 653 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10002624 [exp] 289 / 5e-88 AT3G13460 449 / 8e-151 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10020269 [exp] 284 / 9e-85 AT3G13460 443 / 8e-147 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10035790 [exp] 288 / 2e-83 AT1G09810 338 / 6e-105 evolutionarily conserved C-terminal region 11 (.1) Lus10027582 [exp] 276 / 4e-83 AT5G58190 417 / 6e-140 evolutionarily conserved C-terminal region 10 (.1.2) Lus10037364 [exp] 268 / 4e-80 AT1G09810 345 / 3e-113 evolutionarily conserved C-terminal region 11 (.1) Lus10037028 [exp] 259 / 6e-77 AT3G13060 415 / 6e-138 evolutionarily conserved C-terminal region 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [poplar] [flax] PUA PF04146 [poplar] [flax] YTH YT521-B-like domain
Representative CDS sequence Show only first row Show all	>Potri.010G152300.1 pacid=42797888 polypeptide=Potri.010G152300.1.p locus=Potri.010G152300 ID=Potri.010G152300.1.v4.1 annot-version=v4.1 ATGTTACAAATACCCCTCGCTTCTCTCTCAAAATTTCAAAATGGAGAAATTTCAAGGGGTGGCAGTCTTGGAATGGATATATATAATGTTTCTGGACATG AAAATGCAGAAACTTATTTGATTCAAGGTGCTGAGATAAACCCCATTTTGACAAGTCCAGTTGTTGAGCAAGTTGAAACCATGTACAACGAAGGAACCCC CGAGTTTGTTGCAGGTCAGGGCTTGTTTTATCCTGCTGCCACCAACTATGGTTACTACTGTACAGGATTTGAAACACCCGTTGAATGGGAGGACCATCAA AAGATTTTTGGTGTAGATGGTCCAGAAATCCAGTATGCGGGTGCACAAACTGAAAGTTTACCTTATGTATATTATACACCTAGCTATGGACATGCACAGT CTCCATATAACCCTTACAATCCTTACATACCCGGTGCTATGGTAGGAATTGATGGATCGTATGCTGGGGCACAACAGTATTACACAATCTCCCCTTATCA GGACCCTGTATCGTCACCTGGTTATATTTCTGTTGCTGTTCAACCAGAAGTCTTCCCATATGGTTTGGCAGGTCCTTTGGTAGATAATGGCATAGAACGC AGTAGTAGACCTGATGGGAGAAGTTTAAAGCATGGCGGTTCTTCATCATCTGCAGCCTTTGCTAGAAACATCCCAAGACCTGCTTCAAACCAGACTAATT CTTTGTACAGGATATCTGAAGGGCCAAAAGCTAATGTTGGACCAAGTAAGCAACCAATGACACATGGAGGTGTTTCTTCTGGTAGCATTCTTACTCAAAC TTCATCACATGTGCTTCAGGGTAGAAGTGCTTCTGGTCCCATGCATCCTTCTGACAAAATTTCAAATGGCAAAGTTCAATCTCATCAAAACCAATTAGAA ACCAGTCTCCCTGTCAACAATGGATTTTCTAATTTTGGATCAAGTGCTTATGGCCGAACCTCAGTGGATAAACTTCGATCGAAGACTCATGATGGCAGAA CTCTCAGTGATCTGAATGGAAATGCAGAGCTGTTGGGTGAGCAGAACCGGGGACCTAGGACAAACAAGTCAAAAAATCAACTGGCAGTTAAAGCCTACAC AGCCAAAGTGGGAGATAATAACGGGCTAGGAAACATTGTTATACAGACTGATCAGTACAACAAGGATGATTTCTCAACTGATTATTTAGATGCAAAGTTT TTTGTAATAAAATCATATAGTGAGGATGATGTGCACAAGAGCATCAAATATAATGTTTGGTCATCCACACCTCATGGAAACAAAAAGCTGCAGACTGCAT TTGAAGATGCACAGAAACTAGCTGTGGGAAGACCTAGAGGCTGCCCTATCTTTCTGTTCTTTTCTGTTAATGCAAGTGGTCAATTCTGTGGTGTTGCAGA GATGATTGGCCCGGTGGACCTTCATAGAGATATGGACTTTTGGCAGCAAGATAAATGGAGTGGGAGCTTTCTTGTCAAGTGGCATATTATTAAAGATATA CCAAACTCAAGCTTTAGGCACATCATATTGGAGAATAATGAGAACAAGCCAGTAACTAACAGCAGAGACACCCAAGAGATAATGTATAAGCAAGGTTTAG AGATGCTGAAAACATTCAAAAATCACCCACTTAGGACTTCTATACTTGATGACTTCATGTACTATGAGAATCGCCAGAAAATTATGCAGGACGAAAAAGC CAGGCTTATGTTTAAAAGCTTCCGATCTCCATTGTTCGTACCTGCATTAAATCCTGCCATCGAGCTAAATGGTCTCGTGCAGCAGCCACCACACAAAGAT GAGAGGATGAAGCATAATGATCTTAACAACTTGAAGAAAACTGATGGAAACAAATATGAAAAGATTATGAATCCAAATGATTGCAACAGCTGGAAGAAAG TTGAGACAAACAAAGATGAGAAGATTATAGATCATGATGATCTTCACAGCTTCAAGAACACTGGGACCTCTGCCATCGAGCAACTTTCTTCAGATTCAGA TGTTACCATTTCAAGCAGGGGCAAAGATTCTGGGCAAGTTACAGTGGATGCAGATGATGATATTGGATCTGTGCTAAAGATTGGCTCACTTGATATAAAT CCGAAACAGACTGAATCTAATTCCTTGCTGAGTGCTGCTAACAAATCTGCTGACATTGTCACAGTAGGATCAATGCCTGTTAAAGTTAATGGAATGACTG AATCTTCTGGTTTTCTAACAGTGGGTACTATCCCCCTTGATCCTAGGTCTGTACAACTGGACAAAGATGGCGCTGTTGGTAAACAGGGGTCTCAGTACTG A
AA sequence Show only first row Show all	>Potri.010G152300.1 pacid=42797888 polypeptide=Potri.010G152300.1.p locus=Potri.010G152300 ID=Potri.010G152300.1.v4.1 annot-version=v4.1 MLQIPLASLSKFQNGEISRGGSLGMDIYNVSGHENAETYLIQGAEINPILTSPVVEQVETMYNEGTPEFVAGQGLFYPAATNYGYYCTGFETPVEWEDHQ KIFGVDGPEIQYAGAQTESLPYVYYTPSYGHAQSPYNPYNPYIPGAMVGIDGSYAGAQQYYTISPYQDPVSSPGYISVAVQPEVFPYGLAGPLVDNGIER SSRPDGRSLKHGGSSSSAAFARNIPRPASNQTNSLYRISEGPKANVGPSKQPMTHGGVSSGSILTQTSSHVLQGRSASGPMHPSDKISNGKVQSHQNQLE TSLPVNNGFSNFGSSAYGRTSVDKLRSKTHDGRTLSDLNGNAELLGEQNRGPRTNKSKNQLAVKAYTAKVGDNNGLGNIVIQTDQYNKDDFSTDYLDAKF FVIKSYSEDDVHKSIKYNVWSSTPHGNKKLQTAFEDAQKLAVGRPRGCPIFLFFSVNASGQFCGVAEMIGPVDLHRDMDFWQQDKWSGSFLVKWHIIKDI PNSSFRHIILENNENKPVTNSRDTQEIMYKQGLEMLKTFKNHPLRTSILDDFMYYENRQKIMQDEKARLMFKSFRSPLFVPALNPAIELNGLVQQPPHKD ERMKHNDLNNLKKTDGNKYEKIMNPNDCNSWKKVETNKDEKIIDHDDLHSFKNTGTSAIEQLSSDSDVTISSRGKDSGQVTVDADDDIGSVLKIGSLDIN PKQTESNSLLSAANKSADIVTVGSMPVKVNGMTESSGFLTVGTIPLDPRSVQLDKDGAVGKQGSQY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48110		ECT7	evolutionarily conserved C-ter...		Potri.010G152300 [exp]	0	1
AT3G10070		TAF12, TAFII58	TATA-ASSOCIATED FACTOR II 58, ...		Potri.006G083500 [exp]	1.41	0.9226	Pt-TAFII58.1
AT1G09710	MYB		Homeodomain-like superfamily p...		Potri.002G106500 [exp]	1.73	0.9290
AT1G50620			RING/FYVE/PHD zinc finger supe...		Potri.001G358900 [exp]	2.44	0.8956
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Potri.010G093700 [exp]	2.82	0.8942	APK2.1
AT1G36370		SHM7	serine hydroxymethyltransferas...		Potri.001G212000 [exp]	4.69	0.8731	SHMT9
AT3G58560			DNAse I-like superfamily prote...		Potri.006G195600 [exp]	5.00	0.8614
AT3G09850			D111/G-patch domain-containing...		Potri.018G113600 [exp]	6.48	0.8633
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Potri.012G136100 [exp]	7.21	0.8602
AT5G25520			SPOC domain / Transcription el...		Potri.006G246800 [exp]	7.41	0.8901
					Potri.018G105150 [exp]	8.48	0.8483

Compare expression of checked genes

Potri.010G152300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.