Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06480 801 / 0 DEAD box RNA helicase family protein (.1) AT5G14610 642 / 0 DEAD box RNA helicase family protein (.1.2) AT3G01540 639 / 0 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT1G55150 433 / 4e-140 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 434 / 3e-139 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G20920 334 / 2e-99 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G58510 318 / 1e-95 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT2G42520 318 / 2e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G47330 320 / 9e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G31970 311 / 5e-94 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G071400 [exp] 650 / 0 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.001G347100 [exp] 632 / 0 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.003G038300 [exp] 440 / 1e-142 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G083000 [exp] 442 / 5e-142 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G084600 [exp] 431 / 1e-137 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G194600 [exp] 327 / 6e-97 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G257400 [exp] 333 / 2e-96 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G003600 [exp] 332 / 8e-96 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G217800 [exp] 314 / 5e-94 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001272 [exp] 848 / 0 AT5G14610 665 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10009474 [exp] 834 / 0 AT3G06480 744 / 0.0 DEAD box RNA helicase family protein (.1) Lus10032133 [exp] 625 / 0 AT5G14610 850 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10032135 [exp] 619 / 0 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10014553 [exp] 599 / 0 AT5G14610 833 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10037646 [exp] 441 / 5e-143 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015627 [exp] 441 / 8e-143 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10019484 [exp] 429 / 6e-137 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043334 [exp] 427 / 4e-136 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10000849 [exp] 325 / 1e-98 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Potri.010G152400.4 pacid=42797245 polypeptide=Potri.010G152400.4.p locus=Potri.010G152400 ID=Potri.010G152400.4.v4.1 annot-version=v4.1 ATGGCTACTGCTGAACCAGCTTCAGCTACCGTTGGGCCACGGTATGCTCCAGAAGACCCAACCCTTCCCAAACCATGGACAGGACTGATTGATGGAAGTA CAGGTCTTTTATATTACTGGAATCCTGAAACAAACATCACACAGTATGAAAAGCCCCCATCTGTGCCGCCACAGATGCCTCCTGCTCTACCTCCTAATGC TTCTACGCCTAAGTTGGCCCAGATACCCATGGCACACTCATCGCAACCAAATGGCTTGGTGGCTCAAGCTGCACAACAGACTATGCAAGCATCACAGCAA CAAGGGCAACAGATTAGCCAGTTGCATCAACAATATGGACAAGTAACTTCACAACAGCAGGGTCCCCAAGTAGTGCAGGTTTCTAACCAGCAGGGTGCAC CACAGCAAGGTTCACAGTTGGCACAGGCCATTCAACAACCGGGGCAGTTGAGATCAATGCAGCATCCAGGTCAGCATCTGCTGTCCCATGCAGGGCAGCA AATGCCTCAACAAGGAGGTCAGCAGGTGCCCCAGCAGGTAGGACAGTACATTATGCAGCATCAAAGCTTGCAAATGCCACAACCACAAGGACATCAGTAT GCATATCAGCAGCCAATGCAGTACATGACATATCAGCAAAACGTGCTTCCACAAGGCCAACAAAGCTCGCAGCAGCAGGCACATCTTAGTGCACAAGGGT TGCAATTTCCTAATCAACATGAATACAAGGCAGTGTTGCCGAAGAGAGAGGAAGTTGAGTTCCAGCAAGGAAATCAAACTGGGTTTTCTCCAGCTCGGTT TCAACAGACTGGTGGATCATCCTCTCAAAACCTGTCTTCTGCTGGAAGCAATCCGGTTTGCATGCCGCATTCTGGTGTTCAGTTGGGTCAGGCTCAGCAG TTTGGTAGCTCTTCTGTTAATATTCAACATCCTCCTTCCATGGTTCAGATGCAGCAAATTGGGACTGATTTTCATCAGCAGCATGGTCCTAGGTTTCAAA ATCATATGGGTCCCTCAGTGATGCACAATCAGCAGTCTAATCTGCCCCCTGCTGGGTTAAATATGGGTTATGAGAACAATGCACATGGTAGGTCTGGCAA TGATCATTATATTAATGCTAAAGTGGAAGGGCCTGTGATGAGTCCCCATCAGCCTGAGTTTACAGCTATGTCTAGGGCAAGAAAGCAGCAGGATTCAAGG ACAGGGAGCGTCCCATTTCAGAATGTCGGGCCTGGTCATGGTGGCGGATTTAATGCAGATGGGCATCCCAACCATAATATGTATAGTCATGCAACCAGTG GTCCACCTTTTCCAAACAATGCATTGATGAGACCATCTTTCATCGAAACTGCAGACATTTCTAACCTCTCGCCTGCTGAAGTTTACCGCCAGGAGCATGA AGTCTCAGCTACGGGTGACAATGTTCCTGCCCCATTCATGACTTTTGAAGCCACTGGTTTCCCTTCGGAGATATTACGAGATATACATTCTGCTGGATTC GTATCTCCGACACCAATTCAGGCACAAACATGGCCAATTGCGCTACAAAGTAGGGATATAGTGGCCATTGCCAAAACTGGTTCCGGTAAAACATTGGGTT ACTTGATTCCTGCCTTCATTCTTCTTCAACAGCGACGAAATAATGCTCAGAATGGACCTACAGTGTTAGTCTTGGCTCCAACCAGGGAGCTTGCCACGCA AATACAAGATGAGGTGATGAAATTTGGTCGATCTTCTAGGGTCTCTTGCACGTGCTTGTATGGTGGAGCTCCAAAGATTCCTCAACTGAAAGAATTAGAA AGGGGAGCAGATATAGTTGTGGCAACACCTGGTCGACTCAATGACATCCTTGAAATGAAAAGGATTGACTTTAGGCAAGTTTCACTCCTTGTGCTTGATG AGGCTGATCGAATGCTTGACATGGGATTTGAGCCTCAGATCCGTAAGATTGTGAACGAAATACCTCCTCAAAGGCAAACACTTATGTTCACTGCAACCTG GCCAAAAGAAGTGAGGAAAATAGCAAGTGATCTTCTTGTTCATCCTGTCCAGGTGAACATTGGCAGTGTTGATGTGCTTGCTGCCAACAAGTCAATCACA CAGTATGTTGAAGTGGTCCCACAAATGGAAAAGGATCGGCGCTTGGAGCAAATCCTTAGAACACAAGAGAGAGGTTCCAAGGCTATCATTTTCTGCTCTA CAAAGAGATTGTGTGACCAGCTTGCACGGAGTATTGGACGGAACTTTGGAGCCGCTGCAATCCATGGAGACAAGTCTCAAGGTGAGAGAGACTGGGCTTT AAACCAATTCCGGAGTGGAAAATCTCCAATTTTAGTTGCCACTGACGTTGCTGCCCGTGGTCTTGATATCAAAGACATAAGGATTGTTATCAACTACGAC TTCCCCTCTGGGATTGAGGACTATGTTCACCGAATTGGTAGAACTGGGAGGGCTGGTGCAACTGGGGTGTCATACACCTTTTTCTCTGAGCAGGACTGGA AATATGCAGCTGACCTGGTTAAACTGCTGGAGGGAGCTAATCAGCATGTGCCCGTAGAGGTGCGAGAGATGGCGTTGCGTGGTGGACCTAGCTTTGGGAA GGATCGAGGAGGGTTGAACCGTTTTGATGCTGGCAGGGGTGGTGGGCGGTGGGCTTCTGGTGGCCGTGGTGGGATGAGAGATGGTGGCTTTGGTGGTCGT GGTGGGATGAGAGATGGTGGCTTTGGTGGCCGTGGTGGGATGCGGGAAAACAGCTTTGGGGGACGTGGTGGGATGAGGGAAAACAGCTTTGGGGGACGTG GTGGGATGAGGGATGGGAACTTTGGGGGACGTGGTGGGAGAAACGACTTGTTTTCTGGGCGGGAAAACAGGGGAAGGGGTTTTGGTGGCTCTGGTGGTGG ACATGTAGGTTGGGGTAGGAATGATCGAGGCCCAAATGATCGTCATAGTTACATGGATGGCCGTGGACGTGGTCATGGAAGATTCGATGGTAGAAGGGAT ATGACTGATAAGAGTAGGGGCAGAAGTTTCAGTCGAAGCCCTGATAGGGCTCGAACACGGGGTTATAGCCGGAGCCGGAGCCGGAGCCGTAGTAGGAGTC GGAGCTGGACCAGAAGCCGCAGCCGCAGCCCTCGAGACAGCCGCAGCCGCAGCCCCCGACACAGCCGCAGCCGCAGCCGCAGCCCCCGACGCAGCCGCAG CCGCAGCGGCATCCGCAGCCATAGTCCTCAACATGCCAGTAGTCACAGCCTTAGCCCTCGAAGGAGCCCTGACTATGATAGATTTGAAAGGCCTCGAGAA AGAAACATTGATGAGAAGGATATGACAGTTCCAGAATTGAAGGCTTCAGAACAAGAAATGTCTCCAATGTCGCCGGGCACACATGGTAATGCATTTTCTG GAGCAGAGCTGCTGCCAGCCACTGGGAGTGCTGAGCCAGTGCAACAGGAGGCTACAGGAGATCCAGGGCTTCCTTCAGTTGCTGAAGCTTGA
AA sequence Show only first row Show all	>Potri.010G152400.4 pacid=42797245 polypeptide=Potri.010G152400.4.p locus=Potri.010G152400 ID=Potri.010G152400.4.v4.1 annot-version=v4.1 MATAEPASATVGPRYAPEDPTLPKPWTGLIDGSTGLLYYWNPETNITQYEKPPSVPPQMPPALPPNASTPKLAQIPMAHSSQPNGLVAQAAQQTMQASQQ QGQQISQLHQQYGQVTSQQQGPQVVQVSNQQGAPQQGSQLAQAIQQPGQLRSMQHPGQHLLSHAGQQMPQQGGQQVPQQVGQYIMQHQSLQMPQPQGHQY AYQQPMQYMTYQQNVLPQGQQSSQQQAHLSAQGLQFPNQHEYKAVLPKREEVEFQQGNQTGFSPARFQQTGGSSSQNLSSAGSNPVCMPHSGVQLGQAQQ FGSSSVNIQHPPSMVQMQQIGTDFHQQHGPRFQNHMGPSVMHNQQSNLPPAGLNMGYENNAHGRSGNDHYINAKVEGPVMSPHQPEFTAMSRARKQQDSR TGSVPFQNVGPGHGGGFNADGHPNHNMYSHATSGPPFPNNALMRPSFIETADISNLSPAEVYRQEHEVSATGDNVPAPFMTFEATGFPSEILRDIHSAGF VSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLQQRRNNAQNGPTVLVLAPTRELATQIQDEVMKFGRSSRVSCTCLYGGAPKIPQLKELE RGADIVVATPGRLNDILEMKRIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPQRQTLMFTATWPKEVRKIASDLLVHPVQVNIGSVDVLAANKSIT QYVEVVPQMEKDRRLEQILRTQERGSKAIIFCSTKRLCDQLARSIGRNFGAAAIHGDKSQGERDWALNQFRSGKSPILVATDVAARGLDIKDIRIVINYD FPSGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKYAADLVKLLEGANQHVPVEVREMALRGGPSFGKDRGGLNRFDAGRGGGRWASGGRGGMRDGGFGGR GGMRDGGFGGRGGMRENSFGGRGGMRENSFGGRGGMRDGNFGGRGGRNDLFSGRENRGRGFGGSGGGHVGWGRNDRGPNDRHSYMDGRGRGHGRFDGRRD MTDKSRGRSFSRSPDRARTRGYSRSRSRSRSRSRSWTRSRSRSPRDSRSRSPRHSRSRSRSPRRSRSRSGIRSHSPQHASSHSLSPRRSPDYDRFERPRE RNIDEKDMTVPELKASEQEMSPMSPGTHGNAFSGAELLPATGSAEPVQQEATGDPGLPSVAEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06480			DEAD box RNA helicase family p...		Potri.010G152400 [exp]	0	1
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Potri.005G224900 [exp]	5.00	0.8859	CPC902,TTN8.3
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.007G003400 [exp]	7.48	0.8828	HAC901,Pt-HAC1.4
AT1G79730		ELF7	EARLY FLOWERING 7, hydroxyprol...		Potri.001G190000 [exp]	7.48	0.8751	PAFA901
AT1G80070		EMB33, EMB177, ...	ABNORMAL SUSPENSOR 2, EMBRYO D...		Potri.003G031900 [exp]	8.48	0.8813	Pt-EMB177.4
AT3G44600		AtCYP71, CYP71	cyclophilin 71, cyclophilin71 ...		Potri.009G146400 [exp]	11.18	0.8733
AT5G13480		FY	Transducin/WD40 repeat-like su...		Potri.001G026800 [exp]	14.69	0.8610
AT1G14650			SWAP (Suppressor-of-White-APri...		Potri.005G094600 [exp]	15.71	0.8548
AT4G31880			unknown protein		Potri.006G263300 [exp]	16.30	0.8643
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Potri.010G068400 [exp]	18.57	0.8334
AT1G06230		GTE4	global transcription factor gr...		Potri.013G118900 [exp]	19.28	0.8709

Compare expression of checked genes

Potri.010G152400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.