Plant FIBer expression Database

Potri.010G152501 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G100100
[exp]
102 / 3e-27 AT5G15640 338 / 5e-116 Mitochondrial substrate carrier family protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G152501.1 pacid=42800000 polypeptide=Potri.010G152501.1.p locus=Potri.010G152501 ID=Potri.010G152501.1.v4.1 annot-version=v4.1
ATGGCTGTCGAAACTGAAGTTGCAACTGTTCCTGAGTTGGCTCTTGCTGATTCTGACAACAATCGGGCTAGACAAAGTTTCATATTACTGGTGCTGTCCT
CTTTAATTATTATTCAGCAAGGCTTATTGCATCCAACAGCAGTTGTGAAGACTAGAATGCAAGCAGCAGATTCTGGGCTCTCACACATGTTGCGGAATGA
TGCATTTGAAGTGTCAAAAGATATGATTTTGAAATACACAGAAGGTTTAGACATGCCTGAAGCAACACGTGTCAGCATTGTGAATGGAGTCGCAGGAGGA
AAAACCATCTTTTTTTCATTCAATAGTTGTGCGGTTTGGAACCTAATTGTTATATTCGGAGTGACTCTAAACACGAGAGTCCTATATCTGGAAGGTTATG
GATAA
AA sequence
>Potri.010G152501.1 pacid=42800000 polypeptide=Potri.010G152501.1.p locus=Potri.010G152501 ID=Potri.010G152501.1.v4.1 annot-version=v4.1
MAVETEVATVPELALADSDNNRARQSFILLVLSSLIIIQQGLLHPTAVVKTRMQAADSGLSHMLRNDAFEVSKDMILKYTEGLDMPEATRVSIVNGVAGG
KTIFFSFNSCAVWNLIVIFGVTLNTRVLYLEGYG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G152501
[exp]
0 1
AT1G03390 HXXXD-type acyl-transferase fa... Potri.006G158400
[exp]
11.48 0.5540
AT1G65480 FT FLOWERING LOCUS T, PEBP (phosp... Potri.008G077700
[exp]
14.89 0.6079 Pt-PNFT3.4
AT5G55690 MADS MADS-box transcription factor ... Potri.001G329800
[exp]
22.67 0.6590
AT5G44265 Bifunctional inhibitor/lipid-t... Potri.007G138400
[exp]
31.12 0.5299
AT3G24650 B3 SIS10, ABI3 SUGAR INSENSITIVE 10, ABSCISIC... Potri.002G252000
[exp]
51.72 0.5245 ABI3.1
AT5G10820 Major facilitator superfamily ... Potri.018G017400
[exp]
74.49 0.5021
AT5G26330 Cupredoxin superfamily protein... Potri.006G259000
[exp]
77.07 0.5024
AT2G26450 Plant invertase/pectin methyle... Potri.018G051200
[exp]
78.23 0.5105
AT3G60460 MYB DUO1 DUO POLLEN 1, myb-like HTH tra... Potri.014G054700
[exp]
81.03 0.4587
AT1G04110 SDD1 STOMATAL DENSITY AND DISTRIBUT... Potri.014G193200
[exp]
95.93 0.4794

Potri.010G152501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.