Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17340 1051 / 0 ARM repeat superfamily protein (.1.2) AT3G59020 82 / 2e-15 ARM repeat superfamily protein (.1.2) AT2G31660 71 / 3e-12 EMA1, URM9, SAD2 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G149600 [exp] 97 / 5e-20 AT2G31660 1543 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Potri.002G232600 [exp] 90 / 6e-18 AT2G31660 1499 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025509 [exp] 65 / 4e-10 AT2G31660 1591 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Lus10026726 [exp] 64 / 4e-10 AT2G31660 1084 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF03810 [poplar] [flax] IBN_N Importin-beta N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G152700.1 pacid=42798723 polypeptide=Potri.010G152700.1.p locus=Potri.010G152700 ID=Potri.010G152700.1.v4.1 annot-version=v4.1 ATGGCCATGGAGGTCTCTTTAGTAGCCCAGCTACTGAACGACACTCTCAGCCCCGATAGCACCGTCGTTCACACAGCAACAGAATCCCTCGATCGCTTCT CTCATTCTCCTCACTTCCCCTTCTCTCTCCTCTCCATCTCCACCGGAGGCGGAAATAATGGGCAAAGCGTCGCAGCTGCCACGTACCTTAAAAACTTCAC TCGGCGGAACATTAACAGTGAAAATCCGAATTCAAAATCGAATGTCAGCAAGGAATTCAAGGATAAGCTTATGCGATCTCTGCTTCAAGTCGAACCTCCG GTTCTAAAAGTATTAGTTGAAACGTTTCGGATTATTATTGCAGCAGAGTTTGTTAAGCAGAATAATTGGCCAGAGCTTGTACCTGAATTATGGTCTGCTA TTCAAAATAGTAATCTAATTAGCACTGGTGCGAATTGTGAATGGAAAACTATCAATGCGCTTACGGTTCTTCAAGCACTCGTTAGACCTTTCCAGTACTT TCTAAATCCTAAAGTTGCCAGGGAGCCAGTGCCACCACAGTTGGAGCTGATTGCAAAAGAAATTCTTGTACCAATTCTAAGTTTATTCCATCAACTTGTA CAAAAGGCGTTGTCTGATCAGGGTCGAATAGAAATGGAAATGGAGATGATCCTTCTTATTGTATGCAAGTGCATATATTTCACTGTGAGGTCGCATATGC CATCTGCATTAGTTCCTCTCTTGCCTTCATTTTGTTGTAATTTGATCGGGCTTCTGGGTTCCTTGAGCTTTGATCATGGTGTTGTGCCAGATGATCAATA CTTCTTACGATTGAAGACTGGAAAGAGGACCTTGCTCATATTTCGTGCTCTGATTACCCGACATCGGAAGTATTCTGACAAGTTAATGCCAGACATCATA AACAGTGCTTTGAAGATTGTCAGATATAGCACAAACATCAGCAAGCTTGATTTCCTTTCGGAGAGGATTATTTCATTAGCTTTCGATGTAATTTCAAACA TCCTAGAGACTGGCCCTGGATGGAGATTAGTTTCGTCACATTTTTCATTTTTATTGGACTCTGCAATCTTACCAGCATTGGTCCTGAATGAGAAGGATGT TTCTGAGTGGGAAGAAGATGTAGAAGAGTACATTCGAAAGAACCTTCCATCTGAACTTGAAGAAATTTCTGGATGGAGGGAGGATCTGTTCACGGCCAGA AAAAGTGCAATGAACTTGCTTGGTGTTATTTCAATGTCGAAGGGACCTCCCATGGGGACTTCTAGCAATGGTTCTTCAGCCTCATCCAAGCGGAAAAAAA GTGAAAAGAACAAGAGCAATAATCAGCGCTGTTCTATGGGAGAGTTGCTAGTGCTTCCATTTTTGTCTAAGTTTCCCATCCCTTCTGGCACCAATGCATC TGAAGCAAGAATTATAAATGATTATTTTGGTGTTCTGATGGCATATGGTGGCCTGCAAGATTTTATAAGGGAGCAAAAACCTGGATATATAACCACTTTG GTTCAAACTCGGCTGCTACCACTTTATAAGATACCTGTGAGCTCACCATACTTGATTGCTTCTGCAAACTGGGTTATAGGGGAGCTAGCGTCCTGTCTAA CAGCAGAGATTAATGCAGACGTGTATTCCTCGTTGCTCAAGGCACTGACAATGCCGGACAATGAGCACACTTCTTGTTATCCCGTGCGAATTTCTGCAGC TGGGGCGATTGCAGAGCTTCTTGAAAATGACTATCCGCCACCTGACTGGTTACCTCTTCTTCAAGTTGTGATTAGTCGGATCAATGTCGAAGATGAAGAG ACTTTGATATTGTTTCAGCTTCTTAGTTCTGTGGTGGAGGCTGGTGATGAGAGTGTGATGGATCATATCCCTTTTATGATCACATCATTAGTTGGAGTCC TCTCGAAGTCTATACATCCTAGGATGGAAGCATGGCCTCAAGTGGTTGAAAGAGGCTTTGCAACATTAGCAGTGATGTCTCAATCTTGGGAAAACTTCAT ACCTGAAGAGACTGAGCAGATTGAATCAAGTGAAAAGTGGATATCTGGTCGAACTGTGAACGGTAAATCTTTGTCAGCACTGTTGGAACAGGCTTGGCTT GCACCCATGCATCCAGTGTTTTATAAGGATCAGGACGGTGAGGTGCGGCCCACTCCAATATGCTTGGATGATTCATCGACTTTGCTACGATCTGTTATGC TATCTGTTACTGGAAGCAATGCAATTCAACAGCTTAAACTATCTGAACTGTTGTTGGTTTGGGCTGATCTGATTGCTGACTGGCATGCTTGGGAAGAGTT GGAAGATTTGTCAGTCTTTGACTGCATCAAGGAAGTTGTTACTCTACACAGTAAATATGGGCTGGAGAATTTTATTGTTAGACAGATGCCATCACCTCCT GCTCCACCAGTGCCACAACAATCTATCATTGAAGGCATTGGTGCTTTTGTAAGCGAGGCCATCTCACAATATCCATCTGCAACTTGGAGGGCTTCCTCAT GCGTTCATATGTTACTAAATGTCCCGAGCTACTCGTTTGAAACTGAAAATGTGAAGCAGTCCTTGGTTACTGCTTTTAGCCAGGCTGCATTTTCTCGTTT TAGAGAAATTCAAAGCAAGCCCTGTTCACTGTGGAAGCCTTTGTTGCTTGTTATATCATCATGCTATTTGTGCTATCCTGATACTGTGGAGTCCATTTTA GAGAGAGCTTCAGAGGGAGGTTTCACGATTTGGGTGTCTGCTGTTGCTTTAGTGGCCACTGGCTCTTTTGAACCTGGTCTTTCAACAAAGTCCGAGATAA AGTTAACAGCAATGACTTTGGCCAAGGTGATAGAGCGATTGTTAGGACAGCAGAAATCAGGGGTTGGTTTGTCAATTGACTGCTTTAAATCACTGCTGGA GGCATTGGTAAGGTTGAAAGAAGTGCAGGATGAAATGGAAGAAGATGAAGAAGATGGAGAGGCTGAAGAAGATGGTGACGAAGAAGACGACGACGACGAC AATGAGGATTCCGAGGAGGACGAGCTTGAAGAAACGGAAGAGGAGTTTTTGGAAAGGTATGCAAAAGCAGCCTCTGCCTTAGAGAATGGTGTGGTTGTTG AAGAGGGAGATGTGGAAGATCAAGAGCATGAAATTGAGCTGGGTTCTTTGGATGAAGCAGATGAGGAGAAGGTTGTTTTGTCATTGATAGAGAGGTTCCA CCACGTCCTCATACAAGGGCATGGTATACCACCCCAGATCATCTCCAGTTTCCTGGATGCCTTTCCAAAATTTAGCTGCTTCTTCCAACAATAG
AA sequence Show only first row Show all	>Potri.010G152700.1 pacid=42798723 polypeptide=Potri.010G152700.1.p locus=Potri.010G152700 ID=Potri.010G152700.1.v4.1 annot-version=v4.1 MAMEVSLVAQLLNDTLSPDSTVVHTATESLDRFSHSPHFPFSLLSISTGGGNNGQSVAAATYLKNFTRRNINSENPNSKSNVSKEFKDKLMRSLLQVEPP VLKVLVETFRIIIAAEFVKQNNWPELVPELWSAIQNSNLISTGANCEWKTINALTVLQALVRPFQYFLNPKVAREPVPPQLELIAKEILVPILSLFHQLV QKALSDQGRIEMEMEMILLIVCKCIYFTVRSHMPSALVPLLPSFCCNLIGLLGSLSFDHGVVPDDQYFLRLKTGKRTLLIFRALITRHRKYSDKLMPDII NSALKIVRYSTNISKLDFLSERIISLAFDVISNILETGPGWRLVSSHFSFLLDSAILPALVLNEKDVSEWEEDVEEYIRKNLPSELEEISGWREDLFTAR KSAMNLLGVISMSKGPPMGTSSNGSSASSKRKKSEKNKSNNQRCSMGELLVLPFLSKFPIPSGTNASEARIINDYFGVLMAYGGLQDFIREQKPGYITTL VQTRLLPLYKIPVSSPYLIASANWVIGELASCLTAEINADVYSSLLKALTMPDNEHTSCYPVRISAAGAIAELLENDYPPPDWLPLLQVVISRINVEDEE TLILFQLLSSVVEAGDESVMDHIPFMITSLVGVLSKSIHPRMEAWPQVVERGFATLAVMSQSWENFIPEETEQIESSEKWISGRTVNGKSLSALLEQAWL APMHPVFYKDQDGEVRPTPICLDDSSTLLRSVMLSVTGSNAIQQLKLSELLLVWADLIADWHAWEELEDLSVFDCIKEVVTLHSKYGLENFIVRQMPSPP APPVPQQSIIEGIGAFVSEAISQYPSATWRASSCVHMLLNVPSYSFETENVKQSLVTAFSQAAFSRFREIQSKPCSLWKPLLLVISSCYLCYPDTVESIL ERASEGGFTIWVSAVALVATGSFEPGLSTKSEIKLTAMTLAKVIERLLGQQKSGVGLSIDCFKSLLEALVRLKEVQDEMEEDEEDGEAEEDGDEEDDDDD NEDSEEDELEETEEEFLERYAKAASALENGVVVEEGDVEDQEHEIELGSLDEADEEKVVLSLIERFHHVLIQGHGIPPQIISSFLDAFPKFSCFFQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17340			ARM repeat superfamily protein...		Potri.010G152700 [exp]	0	1
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Potri.016G024200 [exp]	5.65	0.7791
AT1G77320		MEI1	meiosis defective 1, transcrip...		Potri.005G182500 [exp]	6.00	0.7400
AT5G63960		EMB2780	DNA binding;nucleotide binding...		Potri.005G065800 [exp]	6.48	0.7593
AT3G16730		HEB2	hypersensitive to excess boron...		Potri.010G010480 [exp]	7.68	0.7057
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.007G082400 [exp]	13.22	0.7649
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Potri.005G203500 [exp]	14.31	0.7948	ATGSL11.1
AT1G06560			NOL1/NOP2/sun family protein (...		Potri.005G204900 [exp]	23.87	0.7180
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Potri.004G185700 [exp]	29.73	0.7334
AT5G58450			Tetratricopeptide repeat (TPR)...		Potri.013G152800 [exp]	31.40	0.7059
AT4G10320			tRNA synthetase class I (I, L,...		Potri.017G033200 [exp]	39.24	0.7296

Compare expression of checked genes

Potri.010G152700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.