Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64220 676 / 0 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) AT2G22300 675 / 0 CAMTA SR1, CAMTA3 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) AT5G09410 658 / 0 CAMTA CAMTA1, EICBP.B calmodulin-binding transcription activator 1, ethylene induced calmodulin binding protein (.1.2.3) AT1G67310 352 / 4e-105 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) AT4G16150 294 / 4e-85 CAMTA calmodulin binding;transcription regulators (.1) AT3G16940 287 / 4e-83 CAMTA calmodulin binding;transcription regulators (.1) AT1G18840 48 / 4e-05 IQD30 IQ-domain 30 (.1.2) AT4G35450 45 / 0.0001 AKR2A, AFT, AKR2 ankyrin repeat-containing protein 2 (.1.2.3.4.5) AT2G17390 45 / 0.0002 AKR2B ankyrin repeat-containing 2B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G075100 [exp] 521 / 9e-168 AT2G22300 976 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.007G093400 [exp] 495 / 3e-158 AT2G22300 991 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.001G057800 [exp] 382 / 2e-116 AT1G67310 832 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.003G170600 [exp] 361 / 5e-109 AT1G67310 856 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.008G107900 [exp] 312 / 2e-91 AT4G16150 1026 / 0.0 calmodulin binding;transcription regulators (.1) Potri.010G141700 [exp] 308 / 5e-90 AT4G16150 1038 / 0.0 calmodulin binding;transcription regulators (.1) Potri.008G099733 [exp] 127 / 7e-35 AT5G64220 97 / 1e-25 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Potri.010G185200 [exp] 50 / 9e-06 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.018G031600 [exp] 45 / 0.0003 AT2G25600 1078 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003405 [exp] 492 / 1e-156 AT5G64220 1028 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10036162 [exp] 490 / 2e-152 AT5G64220 818 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10041704 [exp] 447 / 3e-141 AT2G22300 912 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Lus10024044 [exp] 444 / 6e-140 AT2G22300 822 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Lus10003119 [exp] 373 / 5e-114 AT1G67310 640 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Lus10011352 [exp] 370 / 2e-111 AT1G67310 637 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Lus10016873 [exp] 284 / 2e-81 AT3G16940 929 / 0.0 calmodulin binding;transcription regulators (.1) Lus10037738 [exp] 269 / 5e-76 AT4G16150 1033 / 0.0 calmodulin binding;transcription regulators (.1) Lus10036455 [exp] 266 / 7e-75 AT4G16150 845 / 0.0 calmodulin binding;transcription regulators (.1) Lus10041126 [exp] 149 / 1e-36 AT4G16150 430 / 1e-137 calmodulin binding;transcription regulators (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF00023 [poplar] [flax] Ank Ankyrin repeat CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0159 [poplar] [flax] E-set PF01833 [poplar] [flax] TIG IPT/TIG domain CL0159 [poplar] [flax] PF03859 [poplar] [flax] CG-1 CG-1 domain
Representative CDS sequence Show only first row Show all	>Potri.010G153100.3 pacid=42799672 polypeptide=Potri.010G153100.3.p locus=Potri.010G153100 ID=Potri.010G153100.3.v4.1 annot-version=v4.1 ATGTTGATGGCTGAGACTAGAAGATACATCCCTGATCATACAATAAATATAGAGCAGATATTGGAAGAAGCAAAGCACCGTTGGCTTCGACCTACTGAAA TATTGGAAATTCTTCGCAATTACCAGAAGTTTAAGTTGACTGCAGAGCCACCAGCTAGGCCTGCAGCTGGGTCTATGTTCTTGTTTGATCGAAAAGCACT TAGATATTTTCGTAAAGATGGTCATCGTTGGAGGAAGAAAAAAGATGGGAAAACTGTCCGAGAAGCTCACGAAAAGTTGAAGGCTGGCAGTGTGGATGTT CTCCATTGTTACTATGCCCATGGGGAGGATAATGAGAACTTTCAGCGGCGGTGCTATTGGATGCTTGATGGGCAGTTAGAGCATATTGTTTTTGTACACT ACAGAGAAGTGAAAGAGGGATACAAGTCTGGTGTATCACGTTTACTAGAAGATTCAGGTACACAGGTTGAAAACCTTCAACCCAGTCCGGTGACTTCCTT TGCACAAGCAGCCTCACCTGCATCTACAGTTCAGACATCTTATGCATCAAGTCCAAACAGAATTGACTGGAATGGAAAAGCATTATCTTCAGAATTTGAG GATGTGGATTCTAGGAATGGTCCAGGAACCTCTTCTCTCGCTCAATCAATTCATGGCTCTATGTCACACAATTCATCTTTACTTTCCCCCAGAGTTGAAG GATTCCATGTGTTACCAAAGAATCCTCCTGGATCATGGCTTGCAGGAGCAAAATTTGATCTTGGCACACAATCATCTCTGTTGCCTGAAATTAGCAGCTC TGAACGAAGTGTATCTAGATTGCCTGGCCAGAAATTTTTTGTTGACCAACCTGGTGGAGCTGAGTTCATTACTAATAAGCTAACAGATGCTACATTAGAG GGTATTGCAGTTCCGGATACTGTGGTTAGTGCAACTGGATTGATCACTGATAGAACAGCAACTCCTCAAAATGTAATCCAGGAGCTTGGTTTCAATTTGA TTTCTCCCCAACTTCATAATCTCTCTGGGACTCAAACAGTAGCTGCTTCTACTGCCCAAGTTGAGAACAAAGCCAATGATGGAGGTGCCAATAATATTGA ATCAGGAGAGCTAAAGAAACTTGACAGTTTCGGGAGATGGATGGATAAAGAAATTGGTGGAGATTGTGATGATTCTTTGATGGCTTCGGATTCCGGCAAT TATTGGAGTACACTGAGTGCTGAGAATGAAGACAAGGAAGTTTCCAGTTTGTCGCACCATATGCAGTTGGACACTGATTCACTGGGCCCTTCTCTTTCCC AGGACCAGCTATTTAGCATCCGTGATTTCTCACCGGATTGGGCTTATTCTGGTGTTGACACGAAGGTTCTGATCATTGGTACGTTCTTGGGAAGCAAGAA GTTTTCCAGTGAAACTAAATGGGGTTGTATGTTTGGTGAGATTGAAGTTTCTGCCGAGGTTTTGAATGATTGTGTCATCCGATGTCAAGTTCCTCAACAT GCTCCTGGGCGTGTTCCATTTTATATCACCTGTCGTAACAGACTATCATGCAGTGAGGTGAGGGAATTTGAATATCGTGAAAATCCTTTTGGAACTGCTT CTTTGCCTGCCGAAAGTGCTCAACAGGAGGAAATTCTCTTTCAAATGCGTTTATCAAAGTTATTATATTTAGGCCCTGGGATGAAGTCGTCGAATTGCTC CATCGAGGATTGTGAAAGATGCAAAATAAGTACTTTATTTTCCTTGAGAAATGATAGTAAAGGGGATTTGGGAAAAGTCCAAGATAATTGTATGGTCGCT GTAGGTGATGGCATTGGTTTTAGAGATAAGTTGATCCAAAGTTTACTGATGGACAGACTTTGTGAGTGGCTGGCCTGTAAAGTTCATGAAGGAGATAAAG GATCGGATGTTTTGGATGGAGAAGGTCAAGGAGTCATCCACTTGGCTGCCAGTCTTGGTTATGAATGGGCCATGGACCTCATAGTTGCTGCCGGTGGCAA TCCCAATTTTAGAGATGCACGAGGTAGAACTGCGCTTCATTGGGCATCATATTTTGGGAGAGAAGAAACAGTGATTGCACTCATTAGATTGGATGCGGAT CCAACTGCTGTTGATGATCCAAATCCAGCATTTCCTGGAGGACAAAGTGCAGCTGATTTAGCTTCATGCCGTGGCCACAAAGGAATCTCTGGATACTTGG CTGAAGCTTTTTTAAGTAGGCATCTTTCATCATTGAAAATTGACCAAAATGAGATGGATCATGATACTGCAGCTATGGCAGCTGAAAAGGAAACTGATAT TGCAGCCCAAGTTGCCTCTTTGTCAAGTAAGGGAGAATACGAACTGCTTTCCTTGAAAGGGTCTCTGGCTGCTGTCAGAAAATCTGCTCGTGCAGTGGCT CTCATTCATGCTGCCTATCGAACAAGTTCTTTCCGTCAAAGACAATTAGCAAAGAGCAGTGATGATATTTCTGAAATTTCACTTGACCTAGCTGCCCTTG GTTCTTTAAACATGGTTCAAAGGAGGGGTCACTTTGAAGATTATTTACATTCTGCAGCTGTAAAGATCCAGCAAAAGTATCGTGGCTGGAAGGGAAGGAA AGATTTTTTGAAAATACGCAATCGAATTGTAAAAATTCAGGCTCATGTGAGAGGACATCAAGTTCGAAAGCAGTACAAAAAGGTAGTTTGGTCAGTTGGC ATTGTTGAAAAGGCCATATTGCGATGGAGGCGGAAACGTACCGGTTTGCGGGGATTTCGGTTGGAAAAGAAAATTGGAGATGTGAAACCAGAATCTGAGA ATGCAGACGAATATGATTTTCTGCGAATAAGCCGCAAACAGAAATTTGCTGGAGTTGAAAAGGCTCTGGCAAGAGTAACGTCAATGGTTCGCCATCCAGA AGCACGGGAGCAGTACATGAGGATGGTTACAAAATTTGAGAATATCAAGATGGGTGACGAAGGGTGTAGTGTATCCCAGCAGGATGAAAGTTCCAGATAG
AA sequence Show only first row Show all	>Potri.010G153100.3 pacid=42799672 polypeptide=Potri.010G153100.3.p locus=Potri.010G153100 ID=Potri.010G153100.3.v4.1 annot-version=v4.1 MLMAETRRYIPDHTINIEQILEEAKHRWLRPTEILEILRNYQKFKLTAEPPARPAAGSMFLFDRKALRYFRKDGHRWRKKKDGKTVREAHEKLKAGSVDV LHCYYAHGEDNENFQRRCYWMLDGQLEHIVFVHYREVKEGYKSGVSRLLEDSGTQVENLQPSPVTSFAQAASPASTVQTSYASSPNRIDWNGKALSSEFE DVDSRNGPGTSSLAQSIHGSMSHNSSLLSPRVEGFHVLPKNPPGSWLAGAKFDLGTQSSLLPEISSSERSVSRLPGQKFFVDQPGGAEFITNKLTDATLE GIAVPDTVVSATGLITDRTATPQNVIQELGFNLISPQLHNLSGTQTVAASTAQVENKANDGGANNIESGELKKLDSFGRWMDKEIGGDCDDSLMASDSGN YWSTLSAENEDKEVSSLSHHMQLDTDSLGPSLSQDQLFSIRDFSPDWAYSGVDTKVLIIGTFLGSKKFSSETKWGCMFGEIEVSAEVLNDCVIRCQVPQH APGRVPFYITCRNRLSCSEVREFEYRENPFGTASLPAESAQQEEILFQMRLSKLLYLGPGMKSSNCSIEDCERCKISTLFSLRNDSKGDLGKVQDNCMVA VGDGIGFRDKLIQSLLMDRLCEWLACKVHEGDKGSDVLDGEGQGVIHLAASLGYEWAMDLIVAAGGNPNFRDARGRTALHWASYFGREETVIALIRLDAD PTAVDDPNPAFPGGQSAADLASCRGHKGISGYLAEAFLSRHLSSLKIDQNEMDHDTAAMAAEKETDIAAQVASLSSKGEYELLSLKGSLAAVRKSARAVA LIHAAYRTSSFRQRQLAKSSDDISEISLDLAALGSLNMVQRRGHFEDYLHSAAVKIQQKYRGWKGRKDFLKIRNRIVKIQAHVRGHQVRKQYKKVVWSVG IVEKAILRWRRKRTGLRGFRLEKKIGDVKPESENADEYDFLRISRKQKFAGVEKALARVTSMVRHPEAREQYMRMVTKFENIKMGDEGCSVSQQDESSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Potri.010G153100 [exp]	0	1
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014318 [exp]	1.41	0.8717
AT1G20980	SBP	ATSPL14, SPL1R2...	squamosa promoter binding prot...		Potri.005G258700 [exp]	2.00	0.8363
AT5G50180			Protein kinase superfamily pro...		Potri.001G343900 [exp]	3.00	0.7741
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014352 [exp]	6.00	0.8111
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014340 [exp]	6.00	0.8113
AT1G78240		OSU1, TSD2, QUA...	TUMOROUS SHOOT DEVELOPMENT 2, ...		Potri.002G098000 [exp]	6.63	0.7381
AT1G29690		CAD1	constitutively activated cell ...		Potri.011G075500 [exp]	8.12	0.7646
AT3G19830		NTMCTYPE5.2 ,NT...	Calcium-dependent lipid-bindin...		Potri.008G085000 [exp]	8.36	0.8103
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014338 [exp]	9.53	0.8032
AT5G13590			unknown protein		Potri.010G213800 [exp]	9.79	0.7755

Compare expression of checked genes

Potri.010G153100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.