Plant FIBer expression Database

Potri.010G153200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G17365 312 / 2e-108 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
AT3G60910 185 / 3e-58 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
AT4G34360 79 / 2e-17 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
AT2G31740 66 / 3e-12 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G261000
[exp]
194 / 1e-61 AT3G60910 387 / 2e-137 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Potri.009G055600
[exp]
187 / 2e-58 AT3G60910 378 / 1e-133 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Potri.004G150200
[exp]
84 / 3e-19 AT4G34360 385 / 1e-136 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Potri.001G317700
[exp]
57 / 2e-09 AT2G31740 886 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019750
[exp]
191 / 3e-60 AT3G60910 394 / 3e-140 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Lus10016376
[exp]
172 / 5e-53 AT3G60910 327 / 2e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Lus10016375
[exp]
89 / 1e-22 AT3G60910 164 / 7e-52 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Lus10016656
[exp]
60 / 3e-10 AT2G31740 895 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF08241 Methyltransf_11 Methyltransferase domain
Representative CDS sequence
>Potri.010G153200.1 pacid=42796910 polypeptide=Potri.010G153200.1.p locus=Potri.010G153200 ID=Potri.010G153200.1.v4.1 annot-version=v4.1
ATGGGAACCTCTACACAAGCATACGGCGAGCCATGGTACTGGGACAATAGATATTCCAGTGAATCAGGACCATTTGATTGGTACCAAAAGTATCCTTCCT
TGGCTCCTCTCATCAACCTCTACATCCCTCGTCATGTCCATCCTCGAATCCTCGTCGTTGGTTGTGGCAACTCAGCATTTAGTGAAGGGATGGTGAGTGA
TGGATATGAAGATGTGGTTAACATTGATATATCTTCTGTGGTAATTGAGGCCATGAAAAAGAAGTATAGCAATCATCCTCAATTGAAATATATTGGAATG
GATGTACGAGATATGAGTGAATTTCAATCTGGTTCATTTAATGCTGTTATTGATAAAGGAACTTTGGACTCTATCCTGTGTGGGAATGATTCACGAAAAA
ATGCTCCCAAGATGCTCAAGGAAGTTTGGAGGGTTCTCAAGGATAATGGAGTGTATATTCTGGTTACATATGGAGCTCCATTGTATCGCTTACAATTATT
AGGGGACTCATGTTCGTGGAGGATAAAGCTCCATGTTATAGATAAACTTTTGTCAGATGAAGGCTCAGAACATCCAGTTCAGGAGCTGATGAATCCTGTA
TCTATAGATGACAATGGGAGTTCGGTGGAAGCAGTACTTGGAAAGAATCCCGATGTTCATTACATTTATGTTTGTACTAAGGATGAATCTTTGACGCCCG
AGCAAAAGCATGAAGAGCTAGTTTAG
AA sequence
>Potri.010G153200.1 pacid=42796910 polypeptide=Potri.010G153200.1.p locus=Potri.010G153200 ID=Potri.010G153200.1.v4.1 annot-version=v4.1
MGTSTQAYGEPWYWDNRYSSESGPFDWYQKYPSLAPLINLYIPRHVHPRILVVGCGNSAFSEGMVSDGYEDVVNIDISSVVIEAMKKKYSNHPQLKYIGM
DVRDMSEFQSGSFNAVIDKGTLDSILCGNDSRKNAPKMLKEVWRVLKDNGVYILVTYGAPLYRLQLLGDSCSWRIKLHVIDKLLSDEGSEHPVQELMNPV
SIDDNGSSVEAVLGKNPDVHYIYVCTKDESLTPEQKHEELV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G17365 S-adenosyl-L-methionine-depend... Potri.010G153200
[exp]
0 1
AT5G67200 Leucine-rich repeat protein ki... Potri.005G141200
[exp]
1.73 0.9021
AT2G16600 ROC3 rotamase CYP 3 (.1.2) Potri.004G168800
[exp]
2.00 0.9048 VCCYP.1
AT5G62880 ARAC10, ATRAC10... RHO-RELATED PROTEIN FROM PLANT... Potri.012G077800
[exp]
4.00 0.8890
AT1G46480 HD WOX4 WUSCHEL related homeobox 4 (.1... Potri.014G025300
[exp]
4.47 0.9063
AT4G03965 RING/U-box superfamily protein... Potri.002G224200
[exp]
6.70 0.8735
AT1G79760 DTA4 downstream target of AGL15-4 (... Potri.001G189400
[exp]
8.36 0.8920 DTA4.1
AT5G59305 unknown protein Potri.001G237700
[exp]
9.00 0.8665
AT4G22860 Cell cycle regulated microtubu... Potri.012G130300
[exp]
9.79 0.8653
AT1G07220 Arabidopsis thaliana protein o... Potri.001G252000
[exp]
11.40 0.8961
AT4G33910 2-oxoglutarate (2OG) and Fe(II... Potri.007G052600
[exp]
12.24 0.8925

Potri.010G153200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.