Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18525 1878 / 0 protein serine/threonine kinases;protein tyrosine kinases;ATP binding;protein kinases (.1) AT1G58230 115 / 3e-25 binding (.1) AT2G45540 113 / 9e-25 WD-40 repeat family protein / beige-related (.1.2) AT4G02660 107 / 9e-23 Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) AT1G03060 104 / 5e-22 SPI SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) AT5G08390 57 / 9e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT3G60920 57 / 2e-07 unknown protein AT5G23430 55 / 7e-07 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G10580 48 / 5e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT3G44200 46 / 0.0003 IBO1, ATNEK6 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G111000 [exp] 118 / 4e-26 AT1G58230 3474 / 0.0 binding (.1) Potri.014G072600 [exp] 113 / 1e-24 AT2G45540 3647 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Potri.002G047700 [exp] 113 / 1e-24 AT1G03060 5063 / 0.0 SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) Potri.002G150000 [exp] 111 / 5e-24 AT2G45540 3620 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Potri.005G215400 [exp] 110 / 6e-24 AT1G03060 5153 / 0.0 SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) Potri.010G255400 [exp] 50 / 1e-05 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G218100 [exp] 50 / 2e-05 AT3G44200 895 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.009G058000 [exp] 49 / 2e-05 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.008G002300 [exp] 49 / 3e-05 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042866 [exp] 121 / 3e-27 AT1G58230 2871 / 0.0 binding (.1) Lus10028167 [exp] 119 / 2e-26 AT1G58230 3404 / 0.0 binding (.1) Lus10009305 [exp] 114 / 4e-25 AT2G45540 1969 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Lus10015858 [exp] 111 / 2e-24 AT2G45540 1209 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Lus10024828 [exp] 109 / 2e-23 AT1G03060 4870 / 0.0 SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) Lus10018744 [exp] 108 / 2e-23 AT1G03060 2581 / 0.0 SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) Lus10030620 [exp] 54 / 9e-07 AT1G10580 926 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003855 [exp] 51 / 3e-06 AT5G64730 524 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10029493 [exp] 52 / 4e-06 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10030869 [exp] 51 / 7e-06 AT1G10580 939 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0186 [poplar] [flax] PF02138 [poplar] [flax] Beach Beige/BEACH domain
Representative CDS sequence Show only first row Show all	>Potri.010G153300.1 pacid=42797037 polypeptide=Potri.010G153300.1.p locus=Potri.010G153300 ID=Potri.010G153300.1.v4.1 annot-version=v4.1 ATGGAGCAAGAAGAGCAACAATCTTGCTTCGAATGCCTTAAACGACGAATCAATTCCGATTTCTCAGACAAGCTAATCTTCTCGTATGCTCTCTCCGATT CTGCTTTCCCCTTCGCATCCTCTGCCGTCGTGCAGGTGTCAAATTCTAATGGAAATTCATCTACTTCGGCTTCGGCTTCTCAGTTTGTGCTGGTGCAGCT GCCGAGTCATAAACACAATTGCTTGACCGAATACGTTAATGAGTGTGTTCTGCAAGATAATGAAGAAAGCGATGGTCATGTGATTGATGATAACCAAGAT CAGGCAAAGGTCAATGGTCTGACTGCTGGGCCAGCTACATCAGATTCTTCATTAGATCAATCTCTGCGTTTACAAAATGGTGACAAGATAGCCAATGTAA ATCATACAGGGTTCGGAAGTTCTGCCTGTGCCCACTCTAGTAGGTTTGCATGTGTCCGAACAATACCTGCATTGGTCCCAACTGCTCATATTGGTATTTC TTCCTATTCCAACTTCCAAAAGATTGCTTCTGACTTCTTGTCTGGGTCTCTGGAAGATCATGTATTGCGCTCCCTCAGTCTACTTATTGAAGGAAAAGCT TCAGGGAGAGACGGTGTGAATTTTCTTCGATTAATTGGGCTACCTTCATTTGAGGAGAGTGGGATTCCAGGTTGCTTGAGGCATCCAAACATAGTTCCTG TTCTTGGCTTGCTCAAAACATCCGAGTATGTCAATTTGGTGCTTCCTAAAACTCCATGTACCTTAGAAGGCATTCTGCATTACTGCCCCAAAGCCTTAAA GTCTGAGTGGCATATAAGGTTTCTGGCATATCAGCTGCTGTCTGCACTAGTTTATTTACATGGTTTAGGGGTTTCCCATGGTAATATACACCCATCCAAT GTAATGCTAACTAATTTGTGCTGGTCTTGGCTTCGTATCTATGATAAGCCTATATCAGGATCGAATGCAAGTTCAAGAAAAGGTGAATCTGATACTCCTT CTGCCTCTGCAAGATTATGCTGCTGCACTGACAGCTGTTTTTCTCAAGTCCTCTATGCGGATTTGAAGCTTTCACCTTCTGTAGAGTGGCATTCACAATT TGATCAGTGGTGGAAGGGAGAGCTGAGTAATTTTGAGTATCTGCTCGTCCTAAATAGATTAGCTGGGAGAAGGTGGGGAGATCACACATTCCATACAGTA ATGCCATGGGTTGTAGATTTCAGTACAAAACCAGATGAAAATTCTGATTCAGGGTGGCGGGACTTGAGCAAAAGCAAGTGGCGACTGGCAAAAGGTGATG AACAGTTGGACTTTACCTTTTCAACATCTGAAATTCCACATCATGTATCAGATGAATGCCTTTCCGAGTTAGCTGTCTGCAGTTACAAAGCTAGGAGGTT ACCCCTGAGTGTTCTGCGTCTGGCTGTTCGTTCAGTGTATGAACCTAATGAATATCCTTCTAATATGCAAAGACTGTACCAATGGACGCCTGACGAGTGC ATCCCAGAGTTCTATTGTGATCCTCAAATTTTTTATTCTCTACACTCTGGCATGACTGATCTGGCAGTACCTCCCTGGGCAGGCAGTCCAGAGGAGTTCA TCAAACTGCACCGAGATGCTTTAGAAAGCGAGCGGGTCTCATACCAAATCCATCACTGGATTGATATAACCTTTGGCTATAAAATGTCAGGGCAGGCTGC TGTTTCTGCCAAGAATGTTATGCTGCCTTCATCAGATACTGCAATGCCAAGGTCAGTGGGACGCCGCCAGCTTTTTACTCGACCACACCCTGTGCGCCGG GTTGTTGCCAGGAAGAAAAATGATAGTGCCAATACTTCTATGAATCAAAGCCAATTAAATGTCGCAGAGAATGATACACCTCTCCTTTCTGAAACTGTTC ATTTGCAACAATTAGAAGAAGTAACTGCATTTTCTGAGCATGCTGGGTATTTGAGTCCCTGCTATTATTACAATCCAGAAAACATTGCAAAGGATGTGCC TTCTGTTAAAGAGTTAGCAAGGGAGACATTTGAGAAAAGCATATGCAAACCACTTGAAATGAGCAGAAACGGGGTGCCATGTGATATTAATTTAAGCTAT CTTCTTGAGCATATGGAGGTGGAGGGTGAAGGTTCCTTGGGATATCAAGAATTATTGCTTTGGAGGCAGAAATCATCTTGTTCAAGTGCCCTTTCAGAAG ATGTTGCGAAGGACATATTTTCTGTTGGTTGTGTCTTAGCTGAACTGTACTTGAAGAGGCCCCTTTTCAATTCAACTTCTTTAGCTTCATACATTCAAAG TGGTATTTCACCTGGATCAATGCAAGAACTTCCTCCTCACACTAAAGTCCTTGTTGAAGCCTGTATCCAGAAGGATTGGGCAAGGAGGCCATCTGCCAAA AGCATTCTGGAATCTCCATATTTTCCTGCAACAGTGAAGTCAGCCTACTTGTTTATTGCACCACTTCAGCTTCTAGCAAATGATGGACCCCGTCTTCAAT ACGCTGCAAATTTTGCAAAACAAGGAGCATTGAAAGCAATGGGGACTCTTGCTGCTGAAATGTGTGCACCTTATTGTTTACCTCTTGTAGTCAATCCTCT GTCAGATATTGAAGCTGAATGGGCTTATGTTCTGCTGAAAGAATTCTTAAAATGTTTGACACCAAAGGCAGTGAAGGGCTTGATCTTGCCAGCTATCCAG AAGATTCTGCAGACTGCAGGTTATTCACATTTGAAGGTATCTCTTCTCCAAGGTTCATTCGTGCAAGAGATATGGAACTTCATCGGTAAACAAGCATATT TGGAGACAGTACATCCTTTAGTTATTTCGAATTTGTGTATTGCTCCTCACAGGAGTTCAGCTGCCGTTGCTTCTGTGCTACTGATTGGCACAAGCGAAGA GCTCGGTGTACCTATCACAGTTAACCAGACGATCTTGCCTTTGATATACTGCTTCGGAAAAGGACTCTGTCCTGATGGAATTGATGTGCTGGTTAGACTT GGTGGTCTTTTTGGAGAAACCTTTATTATCAGGCAGCTGTTGCCATTGCTTAAACAAGTTGCCCGTTCTTGTGTCAATGTTTCAAATACCACTAAACCTG AGCCCGTTCAGAGCTGGAGTGCTTTAGCTCTTGTAGACTGTCTAACAACATTAGATGGTCTAGCTGCTCTCTTGCCAGGGGAGGTGGTTGTAAAGGGGCT GGTTGAAGATAGAAGTTTACATGTTATGGTTCTTACACAGACCAACTTGGAAATTTCAGTGCTTCAGGTTGCTGCTACTACTTTATTAGCAGCTTGTCAG AGAATGGGACCAGATTTAACAGCATTGCATGTTCTGCCACAACTTAAAGAGTTATTCGATGAGCTTGCTTTCTCACAGGAAGCACTGACTGGCTCTGGGT CTTTTGGCCAAAACTTGAAAATTTCCAAATCAAAAGTAGATGGGGAGGTTCAAATTGGAAGCCGTATGGATCTTGTGTTGCTTTTGTATCCTTCTTTTGC ATCTCTTCTTGGGATTGAGAAACTTCGCAAATGTTGTGCCACATGGTTGCTTCTTGAGCAATATCTCCTACGGTATCATAATTGGAAGTGGGAATATACA GGGGAATCATCTCGAAGTGGAGCAGAAAATACAACTGCTAATAGACCTTCTTTGAACAAGGGTTCAACATCTGATTATAACCCTGCCAAGCTGTTACTTA ATGGGGTTGGGTGGTCAATTCCACAATCACAAGGGATTAAAGGTGCAAAAAACCTGATGCCTCAAAAACGATTCAATGACATTCATCAAAGGCCAGTTGA AAGCCATGCAGTAACTTCAAACCTTTTGAAGTCAGAACCCTGGTTTTGGTTCCCCAGTCCAGCTGCTAGTTGGGATGGTCCTGATTTCCTTGGCCGTGTT GGGAGTTTGAAAGAGGAATTACCATGGAAAATTAGAGCATCTATTATATATTCAATCCGAGCTCATCATGGAGCCTTAAGATCCCTTTCTGTTAGCCAAG ATGAGTGTACGGTTTTCACAGCAGGAACTGGTCCAGGGTTCAAAGGAACTGTTCAGAAGTGGGAGCTCTCAAGAATAAATTGTGTTTCTGGCTATTATGG TCATGAAGAGGTTGTGAACGACATTTGTGTATTATCATCGAGTGGAAGAATTGCATCTTCTGATGGAACCATTCATGTTTGGAATAGTAGAACAGGAAAA GTGGTATCAGTTTTTTCTGAACCATCAGTTTATTCTGCACATATTTCAAGTCCATCATCTCAATCAAAGACAAATGATCACCATTCAAACATGCTGAACC CTAATACACTATCAAGTGGATTATTGACTAGTGCATTTGATGGGAGCTTATACACTTGCATGCATTATTTGGATTCTCTTGAAAGGCTTGTGGTTGGCAC TGGAAATGGTTCCCTCAGGTTTATTGATGTTTCCCAAGGTCGAAAGCTTCATCTTTGGAGGGGTGAATCTGCTGAATTTTCTTTTCCTTCTCTTGTCTCT GCCATTTGCTCATGTGGATCTGACAAAACGCCAGCAGATGGAGCTTTTGCTCAACCTTCTTGGGTTGCAGCTGGACTAAGTTCTGGTCATTGCAGGTTAT TCGATTTGAGAAGTGGAAATGTTATTGCCTCTTGGAGGGCTCATGATGGATATGTGACTAAGTTGGCTGCACCGGAGGACCATTTACTTGTTTCCAGTTC TCTTGACAGGACCTTGCGAGTTTGGGACCTGAGAAGGAATTGGCCGCCACCACAGCCATCTGTTTTAAGAGGTCATACAGATGGTGTATCTGGTTTCTCA GTTTGGGGTCAAGACATTATTTCCATTTCCAGAAACAAGATCGGGCTCTCCACTTTATCTAGATCTACAGAAGAAGATGGGCAGCAGCGGATCACACCTC AGAAACTATATGCGGCAGATAATGGAACAAAAAACGTCTCAGTATTATCGAGCATAAGTATTCTTCCTTTCTCACGATTATTTGTAGTTGGATCTGAAGA TGGTTATTTGAGAATATGTTGTTAG
AA sequence Show only first row Show all	>Potri.010G153300.1 pacid=42797037 polypeptide=Potri.010G153300.1.p locus=Potri.010G153300 ID=Potri.010G153300.1.v4.1 annot-version=v4.1 MEQEEQQSCFECLKRRINSDFSDKLIFSYALSDSAFPFASSAVVQVSNSNGNSSTSASASQFVLVQLPSHKHNCLTEYVNECVLQDNEESDGHVIDDNQD QAKVNGLTAGPATSDSSLDQSLRLQNGDKIANVNHTGFGSSACAHSSRFACVRTIPALVPTAHIGISSYSNFQKIASDFLSGSLEDHVLRSLSLLIEGKA SGRDGVNFLRLIGLPSFEESGIPGCLRHPNIVPVLGLLKTSEYVNLVLPKTPCTLEGILHYCPKALKSEWHIRFLAYQLLSALVYLHGLGVSHGNIHPSN VMLTNLCWSWLRIYDKPISGSNASSRKGESDTPSASARLCCCTDSCFSQVLYADLKLSPSVEWHSQFDQWWKGELSNFEYLLVLNRLAGRRWGDHTFHTV MPWVVDFSTKPDENSDSGWRDLSKSKWRLAKGDEQLDFTFSTSEIPHHVSDECLSELAVCSYKARRLPLSVLRLAVRSVYEPNEYPSNMQRLYQWTPDEC IPEFYCDPQIFYSLHSGMTDLAVPPWAGSPEEFIKLHRDALESERVSYQIHHWIDITFGYKMSGQAAVSAKNVMLPSSDTAMPRSVGRRQLFTRPHPVRR VVARKKNDSANTSMNQSQLNVAENDTPLLSETVHLQQLEEVTAFSEHAGYLSPCYYYNPENIAKDVPSVKELARETFEKSICKPLEMSRNGVPCDINLSY LLEHMEVEGEGSLGYQELLLWRQKSSCSSALSEDVAKDIFSVGCVLAELYLKRPLFNSTSLASYIQSGISPGSMQELPPHTKVLVEACIQKDWARRPSAK SILESPYFPATVKSAYLFIAPLQLLANDGPRLQYAANFAKQGALKAMGTLAAEMCAPYCLPLVVNPLSDIEAEWAYVLLKEFLKCLTPKAVKGLILPAIQ KILQTAGYSHLKVSLLQGSFVQEIWNFIGKQAYLETVHPLVISNLCIAPHRSSAAVASVLLIGTSEELGVPITVNQTILPLIYCFGKGLCPDGIDVLVRL GGLFGETFIIRQLLPLLKQVARSCVNVSNTTKPEPVQSWSALALVDCLTTLDGLAALLPGEVVVKGLVEDRSLHVMVLTQTNLEISVLQVAATTLLAACQ RMGPDLTALHVLPQLKELFDELAFSQEALTGSGSFGQNLKISKSKVDGEVQIGSRMDLVLLLYPSFASLLGIEKLRKCCATWLLLEQYLLRYHNWKWEYT GESSRSGAENTTANRPSLNKGSTSDYNPAKLLLNGVGWSIPQSQGIKGAKNLMPQKRFNDIHQRPVESHAVTSNLLKSEPWFWFPSPAASWDGPDFLGRV GSLKEELPWKIRASIIYSIRAHHGALRSLSVSQDECTVFTAGTGPGFKGTVQKWELSRINCVSGYYGHEEVVNDICVLSSSGRIASSDGTIHVWNSRTGK VVSVFSEPSVYSAHISSPSSQSKTNDHHSNMLNPNTLSSGLLTSAFDGSLYTCMHYLDSLERLVVGTGNGSLRFIDVSQGRKLHLWRGESAEFSFPSLVS AICSCGSDKTPADGAFAQPSWVAAGLSSGHCRLFDLRSGNVIASWRAHDGYVTKLAAPEDHLLVSSSLDRTLRVWDLRRNWPPPQPSVLRGHTDGVSGFS VWGQDIISISRNKIGLSTLSRSTEEDGQQRITPQKLYAADNGTKNVSVLSSISILPFSRLFVVGSEDGYLRICC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18525			protein serine/threonine kinas...		Potri.010G153300 [exp]	0	1
AT5G24350			unknown protein		Potri.012G020000 [exp]	3.31	0.8222
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Potri.015G089300 [exp]	4.69	0.8049	ATGSL08.2
AT3G07160		CALS9, ATGSL10	glucan synthase-like 10 (.1)		Potri.001G011900 [exp]	7.48	0.7997
AT1G74770			zinc ion binding (.1)		Potri.015G066600 [exp]	13.03	0.7709
AT4G32820			Tetratricopeptide repeat (TPR)...		Potri.018G057900 [exp]	13.30	0.8019
AT3G17850			Protein kinase superfamily pro...		Potri.012G044700 [exp]	14.49	0.7551
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Potri.004G070500 [exp]	14.49	0.7385
AT1G02080			transcription regulators (.1.2...		Potri.014G058800 [exp]	19.39	0.7611
AT2G48060			unknown protein		Potri.014G137200 [exp]	21.63	0.7400
AT1G58230			binding (.1)		Potri.002G111000 [exp]	26.49	0.7556

Compare expression of checked genes

Potri.010G153300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.