Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06430 717 / 0 AtPPR2, EMB2750 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48730 331 / 2e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53170 325 / 6e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39620 173 / 4e-48 ATPPR5, EMB2453 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G02860 175 / 3e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74850 143 / 3e-36 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT1G09900 138 / 6e-35 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G18940 135 / 6e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G16010 131 / 1e-32 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G22470 130 / 3e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G098700 [exp] 832 / 0 AT3G06430 692 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G243600 [exp] 353 / 1e-116 AT5G48730 691 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G058300 [exp] 336 / 2e-110 AT3G53170 618 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G082400 [exp] 174 / 1e-48 AT4G39620 625 / 0.0 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G297300 [exp] 152 / 1e-39 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G092100 [exp] 152 / 3e-39 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G069100 [exp] 151 / 6e-39 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.006G166200 [exp] 148 / 4e-38 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046200 [exp] 146 / 9e-38 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000862 [exp] 624 / 0 AT3G06430 644 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028683 [exp] 617 / 0 AT3G06430 640 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027552 [exp] 476 / 1e-165 AT3G06430 501 / 1e-175 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039311 [exp] 358 / 9e-123 AT3G06430 358 / 5e-123 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022787 [exp] 337 / 3e-110 AT5G48730 687 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011849 [exp] 332 / 2e-108 AT5G48730 681 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024893 [exp] 308 / 1e-99 AT3G53170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035850 [exp] 169 / 1e-46 AT4G39620 579 / 0.0 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10013894 [exp] 167 / 2e-44 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 164 / 1e-43 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.010G153900.3 pacid=42800204 polypeptide=Potri.010G153900.3.p locus=Potri.010G153900 ID=Potri.010G153900.3.v4.1 annot-version=v4.1 ATGTCTCTCTCCTTCTCATCTTCTCTCCTCCCCTCTCCTCTTCCTCTTCCTCAAAACAAAAACAAAACCCAACAACTGAAACAAAACCAGAACCCTCTTC ACCCTCACAAACTCCTTCTTCGATGTGCATTTTCTTCTTCTGCTACTGCACCACCTTCTTCAACCTTTCCTAAAAAGAAGCATTGGAAACAAGGCGAATT CCCTGGATTTACCGACGCTTCACGTCCCAGGAGAACTGCAATAAAAAACATCAAGAAGAAATTAGACCGTAAGAGCAAAGCCAAGGCTTGGGTCAACACT GTAGCTGAAGCTTTAACTGATTGCGTCCTCAAGAAACAATGGCTCCAAGCAATTCAGGTGTTTGAGATGCTAAAGGAGCAACCATTTTATCAACCAAAAG AAGCTACCTACATGAAACTCTTGGTTCTATTGGGGAGATGCGGTCAGCCTCAACGTGCCCATCAACTTTTCGATGAAATGGTCGAAGAAGGAATAGAACC CACAACTGAACTTTACACTGCATTGCTGGCAGCTTATTGTCGAAACAATCTTATCGATGAGGGTTTCTCAATTATTAACCAGATGAAGTCTCTCCCTCGT TGCCAGCCTGATGTTTATACTTATAGTACTTTACTTAAAGCTTGTGTTGATGCTTCAAGATTTGAGTTAATTGACACTTTGTATCAAGAAATGGATGAAA GATTGATAAGTCCAAACACAGTCACGCAGAATGTAGTTTTGAGCGGATATGGGAGGGTGGGGATGTATGACCAGATGGAGAGAGTGCTATCCGAGATGTT AGAGAGTGCAGCATGTAAACCTGATGTTTGGACTATGAATATAATTCTTAGTGTGTTTGGTAATGAGGGCCAGATTGATTTGATGGAGAGATGGTATGAG AAATTTCGAAATTTTGGAATCGAGCCGGAAACTCGCACTTTTAATATTTTGATCGGTGCATATGGGAAGAAACGAATGTATGATAAGATGTCATCTGTGA TGGAATACATGCGCAAGGTTCAGTTTCCATGGACGACCTCTACTTACAATAATGTTATTGAGGCTTTTGCGGACGTGGGGGATGCAAAAAACATGGAGTA CGCATTTGATCAGATGCGAGCGGAGAGCATGAAAGCAGATACAAAGACATTTTGTTGCCTTATTAATGGATATGCCAATGCGGGTCTCTTCCATAAAGTC ATTAGCAGTGTTCAGTTGGCTGCGAAGTTTGAGATACCGGAGAATACATCATTCTTTAATGCAGTAATATCTGCATGTGCAAAGGCAGATGATTTGATGG AGATGGAAAGAGTCTTTAAGCGGATGAAAGATAAGCAATGCCCACCCGATTCCAGAACCTATTCTATCATGGTTGAGGCATATAGAAAGGAAGGTATGAA TGACAAGATCTACTATTTGGAGCAGGAGAAACAGGAGATGATTGGCGATGGTACTCTCAAGTGA
AA sequence Show only first row Show all	>Potri.010G153900.3 pacid=42800204 polypeptide=Potri.010G153900.3.p locus=Potri.010G153900 ID=Potri.010G153900.3.v4.1 annot-version=v4.1 MSLSFSSSLLPSPLPLPQNKNKTQQLKQNQNPLHPHKLLLRCAFSSSATAPPSSTFPKKKHWKQGEFPGFTDASRPRRTAIKNIKKKLDRKSKAKAWVNT VAEALTDCVLKKQWLQAIQVFEMLKEQPFYQPKEATYMKLLVLLGRCGQPQRAHQLFDEMVEEGIEPTTELYTALLAAYCRNNLIDEGFSIINQMKSLPR CQPDVYTYSTLLKACVDASRFELIDTLYQEMDERLISPNTVTQNVVLSGYGRVGMYDQMERVLSEMLESAACKPDVWTMNIILSVFGNEGQIDLMERWYE KFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKVQFPWTTSTYNNVIEAFADVGDAKNMEYAFDQMRAESMKADTKTFCCLINGYANAGLFHKV ISSVQLAAKFEIPENTSFFNAVISACAKADDLMEMERVFKRMKDKQCPPDSRTYSIMVEAYRKEGMNDKIYYLEQEKQEMIGDGTLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Potri.010G153900 [exp]	0	1
AT1G69200		FLN2	fructokinase-like 2 (.1)		Potri.008G097300 [exp]	1.00	0.9867
AT3G06950			Pseudouridine synthase family ...		Potri.008G206200 [exp]	3.46	0.9694
AT4G04330		AtRbcX1	homologue of cyanobacterial Rb...		Potri.011G010300 [exp]	3.74	0.9731
AT5G11270		OCP3	overexpressor of cationic pero...		Potri.006G251700 [exp]	3.87	0.9712
AT3G10910			RING/U-box superfamily protein...		Potri.013G157000 [exp]	3.87	0.9691
AT5G37930			Protein with RING/U-box and TR...		Potri.004G072800 [exp]	4.89	0.9555
AT4G16390		SVR7	suppressor of variegation 7, p...		Potri.016G006800 [exp]	7.74	0.9667
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Potri.006G163100 [exp]	7.93	0.9672
AT3G18680			Amino acid kinase family prote...		Potri.005G057700 [exp]	9.16	0.9658
AT4G01037		AtWTF1	what's this factor?, Ubiquitin...		Potri.014G096800 [exp]	9.48	0.9610

Compare expression of checked genes

Potri.010G153900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.