Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SPL1.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47070 614 / 0 SBP SPL1 squamosa promoter binding protein-like 1 (.1) AT3G60030 572 / 0 SBP SPL12 squamosa promoter-binding protein-like 12 (.1) AT1G20980 263 / 2e-73 SBP ATSPL14, SPL1R2, FBR6, SPL14 squamosa promoter binding protein-like 14 (.1) AT1G76580 246 / 6e-68 SBP SPL16 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT1G53160 129 / 3e-34 SBP SPL4 squamosa promoter binding protein-like 4 (.1.2) AT2G33810 123 / 2e-32 SBP SPL3 squamosa promoter binding protein-like 3 (.1) AT1G02065 127 / 1e-31 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT1G69170 128 / 2e-31 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT3G15270 121 / 3e-31 SBP SPL5 squamosa promoter binding protein-like 5 (.1) AT3G57920 125 / 6e-31 SBP SPL15, MSC1 squamosa promoter binding protein-like 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G098600 [exp] 1649 / 0 AT2G47070 833 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.014G114300 [exp] 1023 / 0 AT3G60030 962 / 0.0 squamosa promoter-binding protein-like 12 (.1) Potri.002G188700 [exp] 1016 / 0 AT2G47070 972 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.002G002400 [exp] 293 / 2e-83 AT1G20980 970 / 0.0 squamosa promoter binding protein-like 14 (.1) Potri.005G258700 [exp] 285 / 1e-80 AT1G20980 966 / 0.0 squamosa promoter binding protein-like 14 (.1) Potri.002G142200 [exp] 134 / 4e-34 AT1G02065 243 / 8e-79 squamosa promoter binding protein-like 8 (.1.2) Potri.014G057700 [exp] 134 / 5e-34 AT1G02065 247 / 3e-80 squamosa promoter binding protein-like 8 (.1.2) Potri.007G138800 [exp] 124 / 5e-32 AT3G15270 140 / 4e-42 squamosa promoter binding protein-like 5 (.1) Potri.008G197000 [exp] 133 / 1e-31 AT5G18830 657 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038043 [exp] 795 / 0 AT2G47070 896 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10009984 [exp] 638 / 0 AT2G47070 921 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10004523 [exp] 438 / 1e-138 AT3G60030 499 / 5e-163 squamosa promoter-binding protein-like 12 (.1) Lus10010071 [exp] 365 / 4e-111 AT2G47070 631 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10028181 [exp] 129 / 2e-32 AT1G02065 224 / 4e-71 squamosa promoter binding protein-like 8 (.1.2) Lus10016275 [exp] 124 / 6e-31 AT2G42200 179 / 1e-53 squamosa promoter binding protein-like 9 (.1) Lus10042882 [exp] 125 / 7e-31 AT1G02065 225 / 2e-71 squamosa promoter binding protein-like 8 (.1.2) Lus10039846 [exp] 119 / 2e-30 AT1G53160 129 / 8e-38 squamosa promoter binding protein-like 4 (.1.2) Lus10007984 [exp] 125 / 7e-30 AT1G69170 167 / 2e-46 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10033993 [exp] 127 / 9e-30 AT5G18830 661 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [poplar] [flax] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Potri.010G154000.2 pacid=42799005 polypeptide=Potri.010G154000.2.p locus=Potri.010G154000 ID=Potri.010G154000.2.v4.1 annot-version=v4.1 ATGGAGGCTAAAATGGGTGGGAAGTCTCGTCATTTATATGGTCCGGTGCTGTCGGATTTAAAGGCAGTTGGGAAAAAGAGTTTAGAATGGGATTTGAACG ACTGGAAATGGGATGGCGATCTTTTTACAGCTACTCCATTGAATTCTGTACCATCAGATTGCAGGAGTAGGCAGTTGTTCTCTACTGGGCCTGAACTTCC TGAGAAGGCAGGTTTATCGAACAGTTCATCTTCTTGTTCAGATGACAATGACAATCTGGGGGATGATAAAGGAAAGAGAGAATTGGAGAAGAGGAGGAGG GCTGTTTTTGTTGAAGATGAAGACTTGAATGATGCGGCTGGGTCCCTTAATTTGAAGCTAGGTGGGCAAGTCTACCCTATCATGAATGAAGATGCAAAGA GTGGAAAGAAGACAAAGGTTACTATGACGGCTTCAAATCGTGCAGTTTGTCAGGTGGAGGATTGTAGGGCTGATCTGAGCAATGCCAAGGATTATCACCG ACGACATAAGGTTTGTGATGTGCATTCTAAGGCCAGTATGGCTTTGGTGGGGAATGTTATGCAAAGGTTTTGCCAGCAATGTAGCAGGTTTCATGTTCTT CAAGAGTTTGATGAAGGGAAAAGAAGCTGTCGCAGGCGTTTGGCTGGCCATAACAAGCGGAGGAGGAAGACACATCCAGAAAATGTATTCAACGAAGGTT CCTTGAATGATGAAAAGGGCAGCAGCTATCTGCTGATAAGTTTACTGAGGATTCTCTCCAATCTGCAATCAAATAACTCTGATCAAACCAAGGATCAGGA TCTGCTTTCTCATCTATTGAGGAGCCTGGCCAATCTTGCTGGTACAACTAATGGAAGGAGCCTATCTGGATTACTGCAAGGATCTCCAGGTTTGGTGAAT GCCGGAGCAACTGTTGGGAATCTTGAAAAAGTGCAAGATGCGCTTACAAATGGTCCTGAATCTGCTAGGCCTTCTAGTTCAGCTTCTAAGAAAGATGATT GCATTAATTCTCTGGATCTTCCAAGGCCTTTGGGTCAATGTGGGACTGTACCTGTTCCTGATTTGGTACAGAAAAGAATATTGGATAATGACGTACAAGG TGGACATCAAGCGCATTCTGGTCCACAGTCTATACCATTGTTCCTGTCAAGAAACAAACTCCCAGCCAAACCAAATGAACCAGATGCTACTGTTGGAAGG ATCAAGTTGAATAACTTTGACTTGAATAATGTTTATGATAATTCTCAAGACTACGTAGAGAACCTAGATAGGTCTCATGCCCCTGTAAGTACAGGTATGG GCTCTTTCAATTGCCCTTTATGGGTACGATCAGACTCACACAAGACAAACCTGCCTCATATGAGTGGGTACTCTGATTCAACTCCTAGCCAGTCGCCATC TAGTTCTAGTGGAGAGGCTCAGGGTCGTACAGACAGAATCGTTTTTAAACTCTTCGGGAAAGACCCAAATGATTTCCCCGTTGCTCTGCGAACACAAATC CTTCAATGGCTATCTCACAGTCCCACTGACATTGAGAGCTATATAAGGCCCGGATGTATTATATTAACAATATATCTTTGCCTCGAAAAAACAAAATGGG AGGAGGTTTGTCTTGATCTGGGAGCAAGTTTGAGTAGGCTTCTTGATACATTTAGGGACTCTTTTTGGCAAACAGGATGGGTGTATGTTAGGGCGCAGAA TAGCGTATCCTTTATTCATAATGGTAGAGTTGTTTTGGACACACCTTTACCTATAAAGAGCAATAAGAATTGCAGGATATCTAGCATTACACCAATTGCT GTCTCTTTGTCTGAGAGAACTCAATTTGTAGTCAGGGGCTTTAACATTGTTCGGCCCGTGACAAGGGTACTTTGTGCTGTTGAAGGAAAATATCTGGTCC AGGAAACTTGTTATGACTTGATGGATGGTGCTGCTACAATGAATGAGCATGGAAAACCCCAGTGCTTGAACTTTCAGTGCTCTGTACCAAATTTTGTTGG AAGAGGCTTTATTGAGATTGAAGACCATAGTCTAAGCAGCAGCTTTTTCCCCTTCATTGTTGCTGAGCCGGAAGTATGTTCAGAGATACGAACGCTGGAG GATGCAATTCAGGTGGCCGAGACTACTACTGATATTCATGCACTAGCTGAAACAATGGAAATCAAGAATCAATCATTGGACTTCATACATGAAATGGGCT GGCTTCTACATAGAAGTCACTTGAAGTTTAGATTGGGCCAGTTGGATCCCTTCCCTTTCAAACGCTTTGAATGGCTTGTACAATTCTCCATGAACCGTGA TTGGTGTGCTGTGGTGAGAAAACTCTTGGCCATCATGATTGATGGAACAGTAGATGCTGGAGAGCATTCCTCCATTGAGCTTGCGCTGTTTAATATGGGT CTTCTCCACAGAGCTGTGCAAAGAAATTGCAGGCCCATGGTGGAACTACTATTAAGATACACCCCAGATAAACAATTGGGTGGACCAGGCACTCAGCAAA ATCAACTGGCTGATGAGAACAACAGCAGATTCATGTTTAAGCCTGATGTTGCTGGGCCAGCTGGTTTGACTCCTCTTCACGTTGCAGCTTGTAGGGATGG TGCCGAGAATGTGCTGGATGCCTTGACTGATGATCCTGGATTGGTGGGAATTGATGCATGGAAGAGAACTCGTGACAACACAGGTTTGACTCCTTATGAT TATGCATGTCTACGAGGTCATTACTCTTACATTCATCTAATCCAGAGGAAAATCAATAAGAAATCAGAAAGTGGGCATGTGGTGCTTGACATCCCTAGTT CCCTTGCGGATTACAATTCCAAGCAAAAAGATGGGCATAAATTACCAAAATTTGCCGTCTTGCATACCGAGAAGATCGAAATGAAAGCCATGCAGCAGCA CTTGAAGGTTTGTGAGCGGAAGCTGGTTTATGGTGCAGCAAGAACATCTCTTGTCTACCGGCCAGCAATGCTCTCAATGGTGGCCATTGCAGCCGTCTGT GTGTGTGTAGCTCTGCTCTTCAAGAGCTCTCCTGAAGTTCTTTACGTGTTCCAGCCTTTCAGATGGGAAAAGCTGAAGTATGGATCAAGCTAA
AA sequence Show only first row Show all	>Potri.010G154000.2 pacid=42799005 polypeptide=Potri.010G154000.2.p locus=Potri.010G154000 ID=Potri.010G154000.2.v4.1 annot-version=v4.1 MEAKMGGKSRHLYGPVLSDLKAVGKKSLEWDLNDWKWDGDLFTATPLNSVPSDCRSRQLFSTGPELPEKAGLSNSSSSCSDDNDNLGDDKGKRELEKRRR AVFVEDEDLNDAAGSLNLKLGGQVYPIMNEDAKSGKKTKVTMTASNRAVCQVEDCRADLSNAKDYHRRHKVCDVHSKASMALVGNVMQRFCQQCSRFHVL QEFDEGKRSCRRRLAGHNKRRRKTHPENVFNEGSLNDEKGSSYLLISLLRILSNLQSNNSDQTKDQDLLSHLLRSLANLAGTTNGRSLSGLLQGSPGLVN AGATVGNLEKVQDALTNGPESARPSSSASKKDDCINSLDLPRPLGQCGTVPVPDLVQKRILDNDVQGGHQAHSGPQSIPLFLSRNKLPAKPNEPDATVGR IKLNNFDLNNVYDNSQDYVENLDRSHAPVSTGMGSFNCPLWVRSDSHKTNLPHMSGYSDSTPSQSPSSSSGEAQGRTDRIVFKLFGKDPNDFPVALRTQI LQWLSHSPTDIESYIRPGCIILTIYLCLEKTKWEEVCLDLGASLSRLLDTFRDSFWQTGWVYVRAQNSVSFIHNGRVVLDTPLPIKSNKNCRISSITPIA VSLSERTQFVVRGFNIVRPVTRVLCAVEGKYLVQETCYDLMDGAATMNEHGKPQCLNFQCSVPNFVGRGFIEIEDHSLSSSFFPFIVAEPEVCSEIRTLE DAIQVAETTTDIHALAETMEIKNQSLDFIHEMGWLLHRSHLKFRLGQLDPFPFKRFEWLVQFSMNRDWCAVVRKLLAIMIDGTVDAGEHSSIELALFNMG LLHRAVQRNCRPMVELLLRYTPDKQLGGPGTQQNQLADENNSRFMFKPDVAGPAGLTPLHVAACRDGAENVLDALTDDPGLVGIDAWKRTRDNTGLTPYD YACLRGHYSYIHLIQRKINKKSESGHVVLDIPSSLADYNSKQKDGHKLPKFAVLHTEKIEMKAMQQHLKVCERKLVYGAARTSLVYRPAMLSMVAIAAVC VCVALLFKSSPEVLYVFQPFRWEKLKYGSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Potri.010G154000 [exp]	0	1	Pt-SPL1.4
AT3G17450			hAT dimerisation domain-contai...		Potri.014G114100 [exp]	2.00	0.8773
AT5G35560			DENN (AEX-3) domain-containing...		Potri.006G143000 [exp]	2.44	0.8720
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Potri.001G008800 [exp]	2.64	0.8624
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Potri.001G230000 [exp]	4.24	0.8573
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Potri.003G077600 [exp]	4.89	0.8841
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Potri.008G043700 [exp]	6.00	0.8299
AT4G25620			hydroxyproline-rich glycoprote...		Potri.012G144200 [exp]	7.21	0.8422
AT4G33200		XI-15, ATXI-I, ...	MYOSIN XI-15, MYOSIN XI I, myo...		Potri.006G220000 [exp]	8.06	0.8637
AT2G29200		APUM1	pumilio 1 (.1)		Potri.008G058300 [exp]	9.16	0.8406
AT5G08470		EMB2817, PEX1	EMBRYO DEFECTIVE 2817, peroxis...		Potri.001G174100 [exp]	9.74	0.8294

Compare expression of checked genes

Potri.010G154000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.