Plant FIBer expression Database

Potri.010G154250 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G154250.1 pacid=42799157 polypeptide=Potri.010G154250.1.p locus=Potri.010G154250 ID=Potri.010G154250.1.v4.1 annot-version=v4.1
ATGACACCAAGAAAGACCAAGAACAATGACCAAAGTATGCCACACGAGATGTACAAATGTATCAAAGCTCATTTTTCTTCGGACGGCTCTTGTGGTGCAC
TTCGATCACCGTTGGTGACCTTCCTTGATATCGCTGGATTAGTCTCGTCCAGATTTTTCCAACAGTGTTGGTGGTGTTGTCACCGAAACTTCGATGTGTT
TTCAATATTTTTTTTCTCTCCTCTCTCTTCACAAATTACAGGGAGGAGAGAGGAGAGAGAGAACAAACAAATAATAAAAAAAATCTTAGAGGCACATCAA
AGCTTTGATAATGACACTGTCGGTACCGTTGAAAAGATTTCGACAAGATGA
AA sequence
>Potri.010G154250.1 pacid=42799157 polypeptide=Potri.010G154250.1.p locus=Potri.010G154250 ID=Potri.010G154250.1.v4.1 annot-version=v4.1
MTPRKTKNNDQSMPHEMYKCIKAHFSSDGSCGALRSPLVTFLDIAGLVSSRFFQQCWWCCHRNFDVFSIFFFSPLSSQITGRREERENKQIIKKILEAHQ
SFDNDTVGTVEKISTR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G154250
[exp]
0 1
AT3G01570 Oleosin family protein (.1) Potri.001G345800
[exp]
1.41 0.7233
AT1G16930 F-box/RNI-like/FBD-like domain... Potri.011G121400
[exp]
5.09 0.5929
AT1G43730 RNA-directed DNA polymerase (r... Potri.016G103750
[exp]
12.24 0.6663
AT5G20710 BGAL7 beta-galactosidase 7 (.1) Potri.018G062800
[exp]
13.22 0.6663
AT4G25760 ATGDU2 glutamine dumper 2 (.1) Potri.004G108560
[exp]
14.45 0.6020
AT1G79680 ATWAKL10 WALL ASSOCIATED KINASE (WAK)-L... Potri.018G148564
[exp]
17.88 0.5850
AT5G59970 Histone superfamily protein (.... Potri.002G143850
[exp]
29.93 0.5467
AT1G22220 AUF2 auxin up-regulated f-box prote... Potri.001G021900
[exp]
35.24 0.5816
AT4G27650 PEL1 PELOTA, Eukaryotic release fac... Potri.004G092600
[exp]
37.00 0.5373
AT3G05610 Plant invertase/pectin methyle... Potri.005G022900
[exp]
37.49 0.5364 PEF1.2

Potri.010G154250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.